KEGG   PATHWAY: liz00970
Entry
liz00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Lichenihabitans sp. PAMC28606
Class
Genetic Information Processing; Translation
Pathway map
liz00970  Aminoacyl-tRNA biosynthesis
liz00970

Organism
Lichenihabitans sp. PAMC28606 [GN:liz]
Gene
LGH83_00310  [KO:K14233]
LGH83_01025  [KO:K14234]
LGH83_01260  [KO:K01878] [EC:6.1.1.14]
LGH83_01265  glyS; glycine--tRNA ligase subunit beta [KO:K01879] [EC:6.1.1.14]
LGH83_01455  ileS; isoleucine--tRNA ligase [KO:K01870] [EC:6.1.1.5]
LGH83_01470  hisS; histidine--tRNA ligase [KO:K01892] [EC:6.1.1.21]
LGH83_01695  [KO:K14223]
LGH83_01700  [KO:K14232]
LGH83_01905  [KO:K14228]
LGH83_02025  [KO:K14237]
LGH83_02150  [KO:K14232]
LGH83_02205  [KO:K14232]
LGH83_02215  [KO:K14219]
LGH83_02295  [KO:K14233]
LGH83_02325  metG; methionine--tRNA ligase [KO:K01874] [EC:6.1.1.10]
LGH83_02465  [KO:K14233]
LGH83_02575  [KO:K14229]
LGH83_02670  [KO:K14221]
LGH83_02680  [KO:K14237]
LGH83_02705  [KO:K14228]
LGH83_02765  [KO:K14224]
LGH83_02935  argS; arginine--tRNA ligase [KO:K01887] [EC:6.1.1.19]
LGH83_02960  aspS; aspartate--tRNA ligase [KO:K01876] [EC:6.1.1.12]
LGH83_03175  [KO:K14231]
LGH83_03395  tyrS; tyrosine--tRNA ligase [KO:K01866] [EC:6.1.1.1]
LGH83_03435  gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [KO:K02434] [EC:6.3.5.6 6.3.5.7]
LGH83_03445  gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA [KO:K02433] [EC:6.3.5.6 6.3.5.7]
LGH83_03450  gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC [KO:K02435] [EC:6.3.5.6 6.3.5.7]
LGH83_03560  [KO:K01885] [EC:6.1.1.17]
LGH83_03575  [KO:K01881] [EC:6.1.1.15]
LGH83_03620  cysS; cysteine--tRNA ligase [KO:K01883] [EC:6.1.1.16]
LGH83_03930  serS; serine--tRNA ligase [KO:K01875] [EC:6.1.1.11]
LGH83_04345  [KO:K01873] [EC:6.1.1.9]
LGH83_04380  [KO:K14222]
LGH83_04385  [KO:K14220]
LGH83_04400  [KO:K14230]
LGH83_04880  gltX; glutamate--tRNA ligase [KO:K01885] [EC:6.1.1.17]
LGH83_05155  [KO:K14235]
LGH83_05170  [KO:K14236]
LGH83_05175  [KO:K14225]
LGH83_05505  thrS; threonine--tRNA ligase [KO:K01868] [EC:6.1.1.3]
LGH83_06350  [KO:K14219]
LGH83_07040  fmt; methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
LGH83_07095  alaS; alanine--tRNA ligase [KO:K01872] [EC:6.1.1.7]
LGH83_07315  [KO:K02433] [EC:6.3.5.6 6.3.5.7]
LGH83_08950  [KO:K14224]
LGH83_09230  pheT; phenylalanine--tRNA ligase subunit beta [KO:K01890] [EC:6.1.1.20]
LGH83_09235  pheS; phenylalanine--tRNA ligase subunit alpha [KO:K01889] [EC:6.1.1.20]
LGH83_09540  leuS; leucine--tRNA ligase [KO:K01869] [EC:6.1.1.4]
LGH83_09895  [KO:K14228]
LGH83_10435  [KO:K14226]
LGH83_10540  [KO:K14219]
LGH83_10960  [KO:K14230]
LGH83_11495  [KO:K14229]
LGH83_11955  [KO:K14230]
LGH83_11970  [KO:K14218]
LGH83_11975  [KO:K14227]
LGH83_13340  [KO:K14225]
LGH83_13480  [KO:K14227]
LGH83_13485  [KO:K14218]
LGH83_13500  [KO:K14230]
LGH83_13615  [KO:K14225]
LGH83_13805  [KO:K14237]
LGH83_13900  [KO:K14219]
LGH83_14620  [KO:K14218]
LGH83_15295  [KO:K02433] [EC:6.3.5.6 6.3.5.7]
LGH83_16350  [KO:K14228]
LGH83_17060  [KO:K14227]
LGH83_17065  [KO:K14218]
LGH83_17080  [KO:K14230]
LGH83_17360  [KO:K14218]
LGH83_17460  [KO:K14223]
LGH83_17715  [KO:K14233]
LGH83_18300  [KO:K14234]
LGH83_18535  [KO:K04566] [EC:6.1.1.6]
LGH83_18615  [KO:K14219]
LGH83_18705  [KO:K00604] [EC:2.1.2.9]
LGH83_18985  trpS; tryptophan--tRNA ligase [KO:K01867] [EC:6.1.1.2]
LGH83_18990  [KO:K14234]
LGH83_19105  [KO:K02433] [EC:6.3.5.6 6.3.5.7]
LGH83_19765  [KO:K14228]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
liz00250  Alanine, aspartate and glutamate metabolism
liz00260  Glycine, serine and threonine metabolism
liz00270  Cysteine and methionine metabolism
liz00290  Valine, leucine and isoleucine biosynthesis
liz00300  Lysine biosynthesis
liz00330  Arginine and proline metabolism
liz00340  Histidine metabolism
liz00380  Tryptophan metabolism
liz00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   

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