KEGG   PATHWAY: lwa00020
Entry
lwa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Legionella waltersii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lwa00020  Citrate cycle (TCA cycle)
lwa00020

Module
lwa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lwa00020]
lwa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lwa00020]
lwa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lwa00020]
lwa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lwa00020]
lwa_M00982  Methylcitrate cycle [PATH:lwa00020]
Other DBs
GO: 0006099
Organism
Legionella waltersii [GN:lwa]
Gene
SAMEA4504053_0768  cfiA; oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
SAMEA4504053_0858  sdhC; succinate dehydrogenase cytochrome b556 subunit C [KO:K00241]
SAMEA4504053_0859  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
SAMEA4504053_0860  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SAMEA4504053_0861  sdhB; succinate dehydrogenase, iron sulfur protein [KO:K00240] [EC:1.3.5.1]
SAMEA4504053_0862  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SAMEA4504053_0863  sucB; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [KO:K00658] [EC:2.3.1.61]
SAMEA4504053_0864  sucC; succinyl CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
SAMEA4504053_0865  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
SAMEA4504053_1147  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SAMEA4504053_1588  gltA_1; citrate synthase [KO:K01647] [EC:2.3.3.1]
SAMEA4504053_1658  acnA; Aconitate hydratase [KO:K27802]
SAMEA4504053_1734  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SAMEA4504053_1735  aceF; pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
SAMEA4504053_1736  aceE; pyruvate dehydrogenase E1 component oxidoreductase protein AceE [KO:K00163] [EC:1.2.4.1]
SAMEA4504053_1762  gltA_2; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
SAMEA4504053_2224  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SAMEA4504053_2225  porA; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SAMEA4504053_2591  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SAMEA4504053_3168  accC_2; acetyl-CoA carboxylase [KO:K01959] [EC:6.4.1.1]
SAMEA4504053_3458  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lwa00010  Glycolysis / Gluconeogenesis
lwa00061  Fatty acid biosynthesis
lwa00071  Fatty acid degradation
lwa00190  Oxidative phosphorylation
lwa00220  Arginine biosynthesis
lwa00250  Alanine, aspartate and glutamate metabolism
lwa00280  Valine, leucine and isoleucine degradation
lwa00350  Tyrosine metabolism
lwa00470  D-Amino acid metabolism
lwa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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