KEGG   PATHWAY: mich00020
Entry
mich00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Micromonospora sp. HM134
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mich00020  Citrate cycle (TCA cycle)
mich00020

Module
mich_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mich00020]
mich_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mich00020]
mich_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mich00020]
mich_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mich00020]
mich_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mich00020]
Other DBs
GO: 0006099
Organism
Micromonospora sp. HM134 [GN:mich]
Gene
FJK98_18055  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
FJK98_19845  citrate synthase [KO:K01647] [EC:2.3.3.1]
FJK98_02840  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
FJK98_22855  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
FJK98_28190  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FJK98_27280  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
FJK98_24375  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FJK98_09545  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FJK98_03525  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FJK98_09550  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FJK98_03520  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FJK98_28265  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FJK98_28270  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FJK98_28000  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FJK98_10035  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FJK98_28005  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FJK98_10030  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FJK98_10040  succinate dehydrogenase cytochrome b subunit [KO:K00241]
FJK98_30235  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FJK98_30225  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FJK98_28200  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FJK98_04555  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
FJK98_24870  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FJK98_06780  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
FJK98_24380  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mich00010  Glycolysis / Gluconeogenesis
mich00053  Ascorbate and aldarate metabolism
mich00061  Fatty acid biosynthesis
mich00071  Fatty acid degradation
mich00190  Oxidative phosphorylation
mich00220  Arginine biosynthesis
mich00250  Alanine, aspartate and glutamate metabolism
mich00280  Valine, leucine and isoleucine degradation
mich00350  Tyrosine metabolism
mich00470  D-Amino acid metabolism
mich00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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