KEGG   PATHWAY: mmaa00020
Entry
mmaa00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Moritella marina
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmaa00020  Citrate cycle (TCA cycle)
mmaa00020

Module
mmaa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mmaa00020]
mmaa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mmaa00020]
mmaa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mmaa00020]
mmaa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mmaa00020]
mmaa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mmaa00020]
Other DBs
GO: 0006099
Organism
Moritella marina [GN:mmaa]
Gene
FR932_07680  citrate synthase [KO:K01647] [EC:2.3.3.1]
FR932_04755  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
FR932_19345  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FR932_02210  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FR932_20685  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
FR932_07655  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FR932_07650  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FR932_05400  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
FR932_11740  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FR932_19335  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FR932_07640  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FR932_07645  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FR932_07665  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FR932_07660  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FR932_07675  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
FR932_07670  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
FR932_11365  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
FR932_11360  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
FR932_11355  fumarate reductase subunit C [KO:K00246]
FR932_11350  frdD; fumarate reductase subunit FrdD [KO:K00247]
FR932_01245  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FR932_05910  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FR932_19810  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FR932_16295  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FR932_19325  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FR932_19330  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mmaa00010  Glycolysis / Gluconeogenesis
mmaa00053  Ascorbate and aldarate metabolism
mmaa00061  Fatty acid biosynthesis
mmaa00071  Fatty acid degradation
mmaa00190  Oxidative phosphorylation
mmaa00220  Arginine biosynthesis
mmaa00250  Alanine, aspartate and glutamate metabolism
mmaa00280  Valine, leucine and isoleucine degradation
mmaa00350  Tyrosine metabolism
mmaa00470  D-Amino acid metabolism
mmaa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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