KEGG   PATHWAY: msho00020
Entry
msho00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium shottsii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
msho00020  Citrate cycle (TCA cycle)
msho00020

Module
msho_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:msho00020]
msho_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:msho00020]
msho_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:msho00020]
msho_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:msho00020]
msho_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:msho00020]
Other DBs
GO: 0006099
Organism
Mycobacterium shottsii [GN:msho]
Gene
MSHO_56940  gltA2; citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
MSHO_56970  citA; putative citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
MSHO_58940  citrate synthase [KO:K01659] [EC:2.3.3.5]
MSHO_35260  acn; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
MSHO_12310  icd2; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
MSHO_30320  hypothetical protein [KO:K00031] [EC:1.1.1.42]
MSHO_15880  kgd; multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MSHO_25300  lpd; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MSHO_31210  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MSHO_31220  2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MSHO_03540  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MSHO_03550  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MSHO_19100  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MSHO_30550  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MSHO_19090  fumarate reductase [KO:K00240] [EC:1.3.5.1]
MSHO_30540  sdhB; succinate dehydrogenase iron-sulphur protein subunit [KO:K00240] [EC:1.3.5.1]
MSHO_30570  putative succinate dehydrogenase (cytochrome b-556 subunit) SdhC [KO:K00241]
MSHO_30560  sdhD; succinate dehydrogenase [KO:K00242]
MSHO_01390  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MSHO_15840  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MSHO_53190  mqo; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MSHO_54960  pca; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MSHO_18380  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MSHO_00280  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MSHO_47460  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MSHO_46740  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
MSHO_48170  nifJ-1; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
msho00010  Glycolysis / Gluconeogenesis
msho00053  Ascorbate and aldarate metabolism
msho00061  Fatty acid biosynthesis
msho00071  Fatty acid degradation
msho00190  Oxidative phosphorylation
msho00220  Arginine biosynthesis
msho00250  Alanine, aspartate and glutamate metabolism
msho00280  Valine, leucine and isoleucine degradation
msho00350  Tyrosine metabolism
msho00470  D-Amino acid metabolism
msho00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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