KEGG   PATHWAY: mya00020
Entry
mya00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Moritella yayanosii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mya00020  Citrate cycle (TCA cycle)
mya00020

Module
mya_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mya00020]
mya_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mya00020]
mya_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mya00020]
mya_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mya00020]
mya_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mya00020]
mya_M00982  Methylcitrate cycle [PATH:mya00020]
Other DBs
GO: 0006099
Organism
Moritella yayanosii [GN:mya]
Gene
MORIYA_0359  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
MORIYA_0578  [KO:K00382] [EC:1.8.1.4]
MORIYA_1029  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
MORIYA_1030  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
MORIYA_1031  sucB; dihydrolipoamide succinyltransferase, E2 component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
MORIYA_1032  sucA; 2-oxoglutarate decarboxylase, thiamin-requiring [KO:K00164] [EC:1.2.4.2]
MORIYA_1033  sdhB; succinate dehydrogenase, iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MORIYA_1034  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MORIYA_1035  sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00242]
MORIYA_1036  sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00241]
MORIYA_1038  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MORIYA_1296  fumC; Fumarate hydratase class II 1 [KO:K01679] [EC:4.2.1.2]
MORIYA_1691  frdB; Fumarate reductase iron-sulfur subunit [KO:K25995]
MORIYA_1692  [KO:K00233]
MORIYA_1693  [KO:K25996]
MORIYA_2691  pck; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
MORIYA_3303  aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding [KO:K00163] [EC:1.2.4.1]
MORIYA_3304  aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 [KO:K00627] [EC:2.3.1.12]
MORIYA_3305  lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes [KO:K00382] [EC:1.8.1.4]
MORIYA_3330  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MORIYA_3422  mdh; malate dehydrogenase, NAD(P)-binding [KO:K00024] [EC:1.1.1.37]
MORIYA_3572  [KO:K00030] [EC:1.1.1.41]
MORIYA_4009  [KO:K01676] [EC:4.2.1.2]
MORIYA_4203  idh; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MORIYA_4305  [KO:K00382] [EC:1.8.1.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mya00010  Glycolysis / Gluconeogenesis
mya00053  Ascorbate and aldarate metabolism
mya00061  Fatty acid biosynthesis
mya00071  Fatty acid degradation
mya00190  Oxidative phosphorylation
mya00220  Arginine biosynthesis
mya00250  Alanine, aspartate and glutamate metabolism
mya00280  Valine, leucine and isoleucine degradation
mya00350  Tyrosine metabolism
mya00470  D-Amino acid metabolism
mya00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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