KEGG   PATHWAY: ndi00270
Entry
ndi00270                    Pathway                                
Name
Cysteine and methionine metabolism - Naumovozyma dairenensis
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
ndi00270  Cysteine and methionine metabolism
ndi00270

Module
ndi_M00034  Methionine salvage pathway [PATH:ndi00270]
ndi_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:ndi00270]
Other DBs
GO: 0006534 0006555
Organism
Naumovozyma dairenensis [GN:ndi]
Gene
NDAI_0A00120  NDAI0A00120; hypothetical protein [KO:K17989] [EC:4.3.1.17 4.3.1.19]
NDAI_0A01730  NDAI0A01730; hypothetical protein [KO:K00549] [EC:2.1.1.14]
NDAI_0A02360  NDAI0A02360; hypothetical protein [KO:K00058] [EC:1.1.1.95 1.1.1.399]
NDAI_0A03110  NDAI0A03110; hypothetical protein [KO:K00058] [EC:1.1.1.95 1.1.1.399]
NDAI_0A04680  NDAI0A04680; hypothetical protein [KO:K08963] [EC:5.3.1.23]
NDAI_0A07920  NDAI0A07920; hypothetical protein [KO:K00797] [EC:2.5.1.16]
NDAI_0A08580  NDAI0A08580; hypothetical protein [KO:K21456] [EC:6.3.2.3]
NDAI_0B05080  NDAI0B05080; hypothetical protein [KO:K11204] [EC:6.3.2.2]
NDAI_0B06150  NDAI0B06150; hypothetical protein [KO:K01251] [EC:3.13.2.1]
NDAI_0C00340  NDAI0C00340; hypothetical protein [KO:K00026] [EC:1.1.1.37]
NDAI_0C00400  NDAI0C00400; hypothetical protein [KO:K08968] [EC:1.8.4.14]
NDAI_0C03090  NDAI0C03090; hypothetical protein [KO:K08964] [EC:4.2.1.109]
NDAI_0D01810  NDAI0D01810; hypothetical protein [KO:K00872] [EC:2.7.1.39]
NDAI_0D02690  NDAI0D02690; hypothetical protein [KO:K00831] [EC:2.6.1.52]
NDAI_0D02880  NDAI0D02880; hypothetical protein [KO:K17069] [EC:2.5.1.49 2.5.1.47]
NDAI_0D03260  NDAI0D03260; hypothetical protein [KO:K01739] [EC:2.5.1.48]
NDAI_0D03360  NDAI0D03360; hypothetical protein [KO:K00003] [EC:1.1.1.3]
NDAI_0D03470  NDAI0D03470; hypothetical protein [KO:K00826] [EC:2.6.1.42]
NDAI_0E01080  NDAI0E01080; hypothetical protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
NDAI_0E01670  NDAI0E01670; hypothetical protein [KO:K00026] [EC:1.1.1.37]
NDAI_0E01910  NDAI0E01910; hypothetical protein [KO:K14454] [EC:2.6.1.1]
NDAI_0E04700  NDAI0E04700; hypothetical protein [KO:K00928] [EC:2.7.2.4]
NDAI_0F00250  NDAI0F00250; hypothetical protein [KO:K00547] [EC:2.1.1.10]
NDAI_0F04270  NDAI0F04270; hypothetical protein [KO:K00641] [EC:2.3.1.31 2.3.1.46]
NDAI_0F04340  NDAI0F04340; hypothetical protein [KO:K00789] [EC:2.5.1.6]
NDAI_0G00320  NDAI0G00320; hypothetical protein [KO:K09880] [EC:3.1.3.77]
NDAI_0G02420  NDAI0G02420; hypothetical protein [KO:K00802] [EC:2.5.1.22]
NDAI_0G03940  NDAI0G03940; hypothetical protein [KO:K00026] [EC:1.1.1.37]
NDAI_0H00500  NDAI0H00500; hypothetical protein [KO:K01697] [EC:4.2.1.22]
NDAI_0H01480  NDAI0H01480; hypothetical protein [KO:K08967] [EC:1.13.11.53 1.13.11.54]
NDAI_0H02180  NDAI0H02180; hypothetical protein [KO:K14455] [EC:2.6.1.1]
NDAI_0H02400  NDAI0H02400; hypothetical protein [KO:K01758] [EC:4.4.1.1]
NDAI_0I02150  NDAI0I02150; hypothetical protein [KO:K00772] [EC:2.4.2.28]
NDAI_0I02830  NDAI0I02830; hypothetical protein [KO:K00838] [EC:2.6.1.57 2.6.1.39 2.6.1.27 2.6.1.5]
NDAI_0J00890  NDAI0J00890; hypothetical protein [KO:K00133] [EC:1.2.1.11]
NDAI_0J02960  NDAI0J02960; hypothetical protein [KO:K00826] [EC:2.6.1.42]
NDAI_0K00700  NDAI0K00700; hypothetical protein [KO:K01611] [EC:4.1.1.50]
NDAI_0K02590  NDAI0K02590; hypothetical protein [KO:K01738] [EC:2.5.1.47]
NDAI_0K02720  NDAI0K02720; hypothetical protein [KO:K14455] [EC:2.6.1.1]
NDAI_0K02950  NDAI0K02950; hypothetical protein [KO:K17989] [EC:4.3.1.17 4.3.1.19]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01102  O-Phospho-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
ndi00010  Glycolysis / Gluconeogenesis
ndi00250  Alanine, aspartate and glutamate metabolism
ndi00260  Glycine, serine and threonine metabolism
ndi00290  Valine, leucine and isoleucine biosynthesis
ndi00430  Taurine and hypotaurine metabolism
ndi00480  Glutathione metabolism
ndi00620  Pyruvate metabolism
ndi00640  Propanoate metabolism
ndi00770  Pantothenate and CoA biosynthesis
ndi00900  Terpenoid backbone biosynthesis
ndi00920  Sulfur metabolism
KO pathway
ko00270   

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