KEGG   PATHWAY: ndk00010
Entry
ndk00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Nocardioides dokdonensis
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ndk00010  Glycolysis / Gluconeogenesis
ndk00010

Module
ndk_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:ndk00010]
ndk_M00002  Glycolysis, core module involving three-carbon compounds [PATH:ndk00010]
ndk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ndk00010]
ndk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ndk00010]
Other DBs
GO: 0006096 0006094
Organism
Nocardioides dokdonensis [GN:ndk]
Gene
I601_0223  lpdC; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I601_0232  aldA; Putative aldehyde dehydrogenase AldA [KO:K00128] [EC:1.2.1.3]
I601_0325  geoB; Geranial dehydrogenase [KO:K00128] [EC:1.2.1.3]
I601_0379  aceE_1; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
I601_0646  [KO:K00121] [EC:1.1.1.284 1.1.1.1]
I601_0647  ald_1; 3-succinoylsemialdehyde-pyridine dehydrogenase [KO:K00128] [EC:1.2.1.3]
I601_0648  [KO:K00128] [EC:1.2.1.3]
I601_0649  frmA; S-(hydroxymethyl)glutathione dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
I601_0767  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
I601_0768  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
I601_0928  fba; Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
I601_1018  pgm; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
I601_1185  pdhD_1; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I601_1186  pdhC_2; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
I601_1187  bfmBAB; 2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
I601_1188  pdhA; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
I601_1284  ppdK; Pyruvate, phosphate dikinase [KO:K01006] [EC:2.7.9.1]
I601_1285  glpX_1; Fructose-1,6-bisphosphatase class 2 [KO:K02446] [EC:3.1.3.11]
I601_1411  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
I601_1554  acsA; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
I601_1636  ppsA; Phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
I601_1846  gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
I601_1976  eno; Enolase [KO:K01689] [EC:4.2.1.11]
I601_2060  glpX_2; Fructose-1,6-bisphosphatase class 2 [KO:K02446] [EC:3.1.3.11]
I601_2088  aceE_2; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
I601_2681  glkA_1; Glucokinase [KO:K25026]
I601_2682  glkA_2; Glucokinase [KO:K25026]
I601_2693  pfkA1; 6-phosphofructokinase 1 [KO:K21071] [EC:2.7.1.11 2.7.1.90]
I601_2768  fda; Fructose-bisphosphate aldolase class 1 [KO:K01623] [EC:4.1.2.13]
I601_2881  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
I601_2882  pdhD_2; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I601_3045  galM; Aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
I601_3225  adh; Alcohol dehydrogenase [KO:K13953] [EC:1.1.1.1]
I601_3273  pspB; Putative phosphoserine phosphatase 2 [KO:K15634] [EC:5.4.2.11]
I601_3426  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
I601_3431  tpiA; Triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
I601_3432  pgk; Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
I601_3433  gapA; Glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
I601_3679  pyk; Pyruvate kinase [KO:K00873] [EC:2.7.1.40]
I601_3716  aceE_3; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ndk00020  Citrate cycle (TCA cycle)
ndk00030  Pentose phosphate pathway
ndk00500  Starch and sucrose metabolism
ndk00620  Pyruvate metabolism
ndk00640  Propanoate metabolism
ndk00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   

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