KEGG   PATHWAY: nzs03030
Entry
nzs03030                    Pathway                                
Name
DNA replication - Strawberry lethal yellows phytoplasma (CPA)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
nzs03030  DNA replication
nzs03030

Organism
Strawberry lethal yellows phytoplasma (CPA) [GN:nzs]
Gene
SLY_0002  dnaN; DNA polymerase III beta subunit [KO:K02338] [EC:2.7.7.7]
SLY_0042  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0055  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0106  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0128  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0167  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0222  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0251  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0329  dnaE; DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
SLY_0335  polC; DNA polymerase III polC-type [KO:K03763] [EC:2.7.7.7]
SLY_0420  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
SLY_0433  dnaX; DNA polymerase III gamma/tau subunit [KO:K02343] [EC:2.7.7.7]
SLY_0464  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0541  rnhC; Ribonuclease HIII [KO:K03471] [EC:3.1.26.4]
SLY_0567  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0578  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0631  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0644  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0677  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
SLY_0690  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0714  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0732  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0785  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0834  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0854  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0885  yqeN; Hypothetical protein yqeN [KO:K02340] [EC:2.7.7.7]
SLY_0888  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0891  ssb1; Single-strand binding protein 1 [KO:K03111]
SLY_0917  holB; DNA polymerase III delta' subunit [KO:K02341] [EC:2.7.7.7]
SLY_0956  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_0982  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_1022  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_1028  ssb; Single-strand binding protein [KO:K03111]
SLY_1031  ssb; Single-strand binding protein [KO:K03111]
SLY_1076  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_1081  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SLY_1084  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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