KEGG   PATHWAY: paew00020
Entry
paew00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paraneptunicella aestuarii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
paew00020  Citrate cycle (TCA cycle)
paew00020

Module
paew_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:paew00020]
paew_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:paew00020]
paew_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:paew00020]
paew_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:paew00020]
paew_M00982  Methylcitrate cycle [PATH:paew00020]
Other DBs
GO: 0006099
Organism
Paraneptunicella aestuarii [GN:paew]
Gene
KIH87_03315  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KIH87_04845  [KO:K00030] [EC:1.1.1.41]
KIH87_05195  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KIH87_07695  [KO:K01676] [EC:4.2.1.2]
KIH87_09140  [KO:K00031] [EC:1.1.1.42]
KIH87_09575  [KO:K01647] [EC:2.3.3.1]
KIH87_09580  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KIH87_09585  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KIH87_09590  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KIH87_09595  [KO:K00240] [EC:1.3.5.1]
KIH87_09600  [KO:K00164] [EC:1.2.4.2]
KIH87_09605  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KIH87_09610  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KIH87_09615  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KIH87_10415  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
KIH87_15420  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KIH87_15425  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
KIH87_15430  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
paew00010  Glycolysis / Gluconeogenesis
paew00053  Ascorbate and aldarate metabolism
paew00061  Fatty acid biosynthesis
paew00071  Fatty acid degradation
paew00190  Oxidative phosphorylation
paew00220  Arginine biosynthesis
paew00250  Alanine, aspartate and glutamate metabolism
paew00280  Valine, leucine and isoleucine degradation
paew00350  Tyrosine metabolism
paew00470  D-Amino acid metabolism
paew00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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