KEGG   PATHWAY: aalk00630
Entry
aalk00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Abyssibius alkaniclasticus
Class
Metabolism; Carbohydrate metabolism
Pathway map
aalk00630  Glyoxylate and dicarboxylate metabolism
aalk00630

Module
aalk_M00373  Ethylmalonyl pathway [PATH:aalk00630]
aalk_M00621  Glycine cleavage system [PATH:aalk00630]
aalk_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:aalk00630]
Other DBs
GO: 0046487 0043648
Organism
Abyssibius alkaniclasticus [GN:aalk]
Gene
LGT41_0006555  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
LGT41_0014530  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
LGT41_0009005  malate synthase G [KO:K01638] [EC:2.3.3.9]
LGT41_0002085  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LGT41_0012995  citrate synthase [KO:K01647] [EC:2.3.3.1]
LGT41_0009675  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
LGT41_0000705  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
LGT41_0000950  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
LGT41_0008615  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
LGT41_0013545  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
LGT41_0000710  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
LGT41_0001610  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
LGT41_0001985  ccrA; crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
LGT41_0007595  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
LGT41_0001995  methylmalonyl-CoA mutase family protein [KO:K14447] [EC:5.4.99.63]
LGT41_0000495  acyl-CoA/acyl-ACP dehydrogenase [KO:K14448] [EC:1.3.8.12]
LGT41_0002060  MaoC family dehydratase [KO:K14449] [EC:4.2.1.148]
LGT41_0000610  L-malyl-CoA/beta-methylmalyl-CoA lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
LGT41_0002075  CoA ester lyase [KO:K14451] [EC:3.1.2.30]
LGT41_0013680  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
LGT41_0013700  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
LGT41_0013670  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
LGT41_0001890  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
LGT41_0001895  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
LGT41_0001900  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
LGT41_0012740  catalase [KO:K03781] [EC:1.11.1.6]
LGT41_0004835  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
LGT41_0005280  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
LGT41_0015355  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
LGT41_0007100  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
LGT41_0013770  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
LGT41_0014510  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
LGT41_0008450  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
LGT41_0011735  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
LGT41_0007750  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
LGT41_0008400  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
LGT41_0011210  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
LGT41_0011400  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
LGT41_0012885  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
LGT41_0002010  beta-eliminating lyase-related protein [KO:K00600] [EC:2.1.2.1]
LGT41_0014845  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
LGT41_0002910  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
LGT41_0002920  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
LGT41_0008375  aminomethyltransferase family protein [KO:K00605] [EC:2.1.2.10]
LGT41_0002570  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LGT41_0012750  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LGT41_0002915  gcvH; glycine cleavage system protein GcvH [KO:K02437]
LGT41_0013880  DUF4147 domain-containing protein [KO:K11529] [EC:2.7.1.165]
LGT41_0003290  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
LGT41_0000345  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
LGT41_0009625  NAD(P)H-dependent oxidoreductase subunit E [KO:K22515] [EC:1.17.1.9]
LGT41_0007315  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
aalk00010  Glycolysis / Gluconeogenesis
aalk00020  Citrate cycle (TCA cycle)
aalk00030  Pentose phosphate pathway
aalk00053  Ascorbate and aldarate metabolism
aalk00071  Fatty acid degradation
aalk00230  Purine metabolism
aalk00250  Alanine, aspartate and glutamate metabolism
aalk00260  Glycine, serine and threonine metabolism
aalk00620  Pyruvate metabolism
aalk00710  Carbon fixation by Calvin cycle
aalk00750  Vitamin B6 metabolism
aalk00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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