KEGG   PATHWAY: aber00020
Entry
aber00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Acinetobacter bereziniae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aber00020  Citrate cycle (TCA cycle)
aber00020

Module
aber_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aber00020]
aber_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aber00020]
aber_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aber00020]
aber_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aber00020]
aber_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aber00020]
Other DBs
GO: 0006099
Organism
Acinetobacter bereziniae [GN:aber]
Gene
BSR55_15505  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BSR55_09705  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
BSR55_03425  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BSR55_14800  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BSR55_14810  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
BSR55_15480  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BSR55_15475  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BSR55_15470  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSR55_16335  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSR55_17875  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSR55_15460  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BSR55_15465  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BSR55_01440  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
BSR55_13655  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
BSR55_15490  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BSR55_15485  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BSR55_15500  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BSR55_15495  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BSR55_17690  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BSR55_10335  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BSR55_18490  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BSR55_09230  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BSR55_05270  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
BSR55_20325  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BSR55_16340  diaminohydroxyphosphoribosylaminopyrimidine deaminase [KO:K00627] [EC:2.3.1.12]
BSR55_20320  pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aber00010  Glycolysis / Gluconeogenesis
aber00053  Ascorbate and aldarate metabolism
aber00061  Fatty acid biosynthesis
aber00071  Fatty acid degradation
aber00190  Oxidative phosphorylation
aber00220  Arginine biosynthesis
aber00250  Alanine, aspartate and glutamate metabolism
aber00280  Valine, leucine and isoleucine degradation
aber00350  Tyrosine metabolism
aber00470  D-Amino acid metabolism
aber00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system