KEGG   PATHWAY: acip00020
Entry
acip00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Acidovorax carolinensis P4
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acip00020  Citrate cycle (TCA cycle)
acip00020

Module
acip_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:acip00020]
acip_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:acip00020]
acip_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acip00020]
acip_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:acip00020]
acip_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acip00020]
Other DBs
GO: 0006099
Organism
Acidovorax carolinensis P4 [GN:acip]
Gene
CBP36_20365  hypothetical protein [KO:K01647] [EC:2.3.3.1]
CBP36_20440  hypothetical protein [KO:K01647] [EC:2.3.3.1]
CBP36_06715  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CBP36_20900  hypothetical protein [KO:K01647] [EC:2.3.3.1]
CBP36_19000  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
CBP36_05185  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CBP36_06765  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CBP36_09130  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CBP36_09135  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CBP36_08815  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CBP36_08820  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
CBP36_09805  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CBP36_08825  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CBP36_10210  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CBP36_18720  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CBP36_18725  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CBP36_00345  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
CBP36_06730  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CBP36_06725  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CBP36_06740  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CBP36_06735  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CBP36_08075  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CBP36_08080  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CBP36_06750  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CBP36_00510  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CBP36_09815  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CBP36_09810  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acip00010  Glycolysis / Gluconeogenesis
acip00053  Ascorbate and aldarate metabolism
acip00061  Fatty acid biosynthesis
acip00071  Fatty acid degradation
acip00190  Oxidative phosphorylation
acip00220  Arginine biosynthesis
acip00250  Alanine, aspartate and glutamate metabolism
acip00280  Valine, leucine and isoleucine degradation
acip00350  Tyrosine metabolism
acip00470  D-Amino acid metabolism
acip00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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