KEGG   PATHWAY: ack00020
Entry
ack00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acidovorax sp. KKS102
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ack00020  Citrate cycle (TCA cycle)
ack00020

Module
ack_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ack00020]
ack_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ack00020]
ack_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ack00020]
ack_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ack00020]
ack_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ack00020]
Other DBs
GO: 0006099
Organism
Acidovorax sp. KKS102 [GN:ack]
Gene
C380_16945  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
C380_12370  methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
C380_18780  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
C380_16895  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C380_00575  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C380_12610  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C380_10905  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
C380_10910  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
C380_11420  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
C380_10915  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
C380_11245  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
C380_23300  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
C380_23305  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
C380_00720  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
C380_16930  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C380_16935  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
C380_16920  succinate dehydrogenase subunit C [KO:K00241]
C380_16925  succinate dehydrogenase subunit D [KO:K00242]
C380_15700  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C380_15695  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
C380_16910  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C380_00900  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
C380_11410  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
C380_16510  2-oxoacid dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
C380_11415  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ack00010  Glycolysis / Gluconeogenesis
ack00053  Ascorbate and aldarate metabolism
ack00061  Fatty acid biosynthesis
ack00071  Fatty acid degradation
ack00190  Oxidative phosphorylation
ack00220  Arginine biosynthesis
ack00250  Alanine, aspartate and glutamate metabolism
ack00280  Valine, leucine and isoleucine degradation
ack00350  Tyrosine metabolism
ack00470  D-Amino acid metabolism
ack00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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