KEGG   PATHWAY: acv00020
Entry
acv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acinetobacter sp. TGL-Y2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acv00020  Citrate cycle (TCA cycle)
acv00020

Module
acv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:acv00020]
acv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:acv00020]
acv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acv00020]
acv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:acv00020]
acv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acv00020]
Other DBs
GO: 0006099
Organism
Acinetobacter sp. TGL-Y2 [GN:acv]
Gene
AMD27_04635  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
AMD27_05655  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
AMD27_08930  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
AMD27_02480  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
AMD27_09780  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AMD27_10385  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AMD27_04660  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AMD27_04665  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AMD27_04670  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AMD27_13710  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AMD27_04680  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AMD27_04675  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AMD27_14760  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
AMD27_04650  fumarate reductase (quinol) flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AMD27_04655  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AMD27_04640  succinate dehydrogenase [KO:K00241]
AMD27_04645  succinate dehydrogenase [KO:K00242]
AMD27_02390  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AMD27_08195  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AMD27_13775  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AMD27_11515  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
AMD27_15285  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
AMD27_15280  pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acv00010  Glycolysis / Gluconeogenesis
acv00053  Ascorbate and aldarate metabolism
acv00061  Fatty acid biosynthesis
acv00071  Fatty acid degradation
acv00190  Oxidative phosphorylation
acv00220  Arginine biosynthesis
acv00250  Alanine, aspartate and glutamate metabolism
acv00280  Valine, leucine and isoleucine degradation
acv00350  Tyrosine metabolism
acv00470  D-Amino acid metabolism
acv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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