KEGG   PATHWAY: adi00020
Entry
adi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Alloalcanivorax dieselolei
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
adi00020  Citrate cycle (TCA cycle)
adi00020

Module
adi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:adi00020]
adi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:adi00020]
adi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:adi00020]
adi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:adi00020]
Other DBs
GO: 0006099
Organism
Alloalcanivorax dieselolei [GN:adi]
Gene
B5T_02688  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
B5T_01681  Citrate synthase [KO:K01647] [EC:2.3.3.1]
B5T_03090  DNA binding domain protein, excisionase family [KO:K01647] [EC:2.3.3.1]
B5T_01500  Citrate synthase [KO:K01647] [EC:2.3.3.1]
B5T_02361  prpC; 2-methylcitrate synthase/citrate synthase II subfamily [KO:K01659] [EC:2.3.3.5]
B5T_03302  acnA2; Aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
B5T_02397  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
B5T_01981  icdA; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
B5T_00711  icd; Dehydrogenase, isocitrate/isopropylmalate family [KO:K00030] [EC:1.1.1.41]
B5T_02683  sucA; Oxoglutarate dehydrogenase (Succinyl-transferring) [KO:K00164] [EC:1.2.4.2]
B5T_02682  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
B5T_02681  lpdG; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B5T_02679  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
B5T_02680  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
B5T_02685  sdhA; Succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B5T_02684  sdhB; Succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
B5T_02687  sdhC; Succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
B5T_02686  sdhD; Succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
B5T_02579  fumA; Fumarate hydratase I, alpha subunit domain protein [KO:K01676] [EC:4.2.1.2]
B5T_04443  fumC; Lyase superfamily [KO:K01679] [EC:4.2.1.2]
B5T_02434  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B5T_00543  pckA; Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
B5T_03459  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
B5T_03458  aceF; Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
adi00010  Glycolysis / Gluconeogenesis
adi00053  Ascorbate and aldarate metabolism
adi00061  Fatty acid biosynthesis
adi00071  Fatty acid degradation
adi00190  Oxidative phosphorylation
adi00220  Arginine biosynthesis
adi00250  Alanine, aspartate and glutamate metabolism
adi00280  Valine, leucine and isoleucine degradation
adi00350  Tyrosine metabolism
adi00470  D-Amino acid metabolism
adi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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