KEGG   PATHWAY: afus00020
Entry
afus00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Aequoribacter fuscus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
afus00020  Citrate cycle (TCA cycle)
afus00020

Module
afus_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:afus00020]
afus_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:afus00020]
afus_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:afus00020]
afus_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:afus00020]
afus_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:afus00020]
Other DBs
GO: 0006099
Organism
Aequoribacter fuscus [GN:afus]
Gene
EYZ66_07320  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
EYZ66_13890  citrate (Si)-synthase [KO:K01659] [EC:2.3.3.5]
EYZ66_05740  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EYZ66_06980  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EYZ66_07295  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EYZ66_07290  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
EYZ66_07285  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EYZ66_05560  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
EYZ66_05565  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
EYZ66_07275  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EYZ66_07280  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EYZ66_07305  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EYZ66_07300  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EYZ66_07315  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
EYZ66_07310  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
EYZ66_04635  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EYZ66_07440  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EYZ66_03485  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
EYZ66_04530  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
EYZ66_04535  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
afus00010  Glycolysis / Gluconeogenesis
afus00053  Ascorbate and aldarate metabolism
afus00061  Fatty acid biosynthesis
afus00071  Fatty acid degradation
afus00190  Oxidative phosphorylation
afus00220  Arginine biosynthesis
afus00250  Alanine, aspartate and glutamate metabolism
afus00280  Valine, leucine and isoleucine degradation
afus00350  Tyrosine metabolism
afus00470  D-Amino acid metabolism
afus00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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