KEGG   PATHWAY: ahj00020
Entry
ahj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aeromonas hydrophila J-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ahj00020  Citrate cycle (TCA cycle)
ahj00020

Module
ahj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ahj00020]
ahj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ahj00020]
ahj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ahj00020]
ahj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ahj00020]
ahj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ahj00020]
Other DBs
GO: 0006099
Organism
Aeromonas hydrophila J-1 [GN:ahj]
Gene
V469_12710  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
V469_11450  methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
V469_02180  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
V469_15505  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
V469_16990  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
V469_12685  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
V469_12680  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
V469_02150  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
V469_12670  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
V469_12675  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
V469_12695  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
V469_12690  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
V469_12705  succinate dehydrogenase [KO:K00241]
V469_12700  sdhD; succinate dehydrogenase [KO:K00242]
V469_05415  fumarate reductase [KO:K00244] [EC:1.3.5.1]
V469_05410  fumarate reductase [KO:K00245] [EC:1.3.5.1]
V469_05405  fumarate reductase [KO:K00246]
V469_05400  fumarate reductase [KO:K00247]
V469_12300  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
V469_04990  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
V469_19785  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
V469_20280  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
V469_02140  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
V469_02145  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
V469_05585  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
V469_14945  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ahj00010  Glycolysis / Gluconeogenesis
ahj00053  Ascorbate and aldarate metabolism
ahj00061  Fatty acid biosynthesis
ahj00071  Fatty acid degradation
ahj00190  Oxidative phosphorylation
ahj00220  Arginine biosynthesis
ahj00250  Alanine, aspartate and glutamate metabolism
ahj00280  Valine, leucine and isoleucine degradation
ahj00350  Tyrosine metabolism
ahj00470  D-Amino acid metabolism
ahj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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