KEGG   PATHWAY: aly00240
Entry
aly00240                    Pathway                                
Name
Pyrimidine metabolism - Arabidopsis lyrata (lyrate rockcress)
Class
Metabolism; Nucleotide metabolism
Pathway map
aly00240  Pyrimidine metabolism
aly00240

Module
aly_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:aly00240]
aly_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:aly00240]
aly_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:aly00240]
aly_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:aly00240]
Other DBs
GO: 0006220 0006213
Organism
Arabidopsis lyrata (lyrate rockcress) [GN:aly]
Gene
9326899  carbamoyl-phosphate synthase large chain, chloroplastic [KO:K01955] [EC:6.3.5.5]
9321308  carbamoyl-phosphate synthase small chain, chloroplastic [KO:K01956] [EC:6.3.5.5]
9298336  carbamoyl-phosphate synthase small chain, chloroplastic [KO:K01956] [EC:6.3.5.5]
9313138  carbamoyl-phosphate synthase small chain, chloroplastic [KO:K01956] [EC:6.3.5.5]
9321433  aspartate carbamoyltransferase, chloroplastic isoform X1 [KO:K00609] [EC:2.1.3.2]
9303815  dihydroorotase, mitochondrial isoform X2 [KO:K01465] [EC:3.5.2.3]
9308119  dihydroorotate dehydrogenase (quinone), mitochondrial [KO:K00254] [EC:1.3.5.2]
9314048  uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
9314389  probable UMP-CMP kinase 1 [KO:K13800] [EC:2.7.4.14]
9303689  probable UMP-CMP kinase 2 isoform X1 [KO:K13800] [EC:2.7.4.14]
9310379  UMP-CMP kinase 3 isoform X1 [KO:K13800] [EC:2.7.4.14]
9321338  uncharacterized protein LOC9321338 [KO:K09903] [EC:2.7.4.22]
9321339  uncharacterized protein LOC9321339 [KO:K09903] [EC:2.7.4.22]
9300921  nucleoside diphosphate kinase II, chloroplastic [KO:K00940] [EC:2.7.4.6]
9310729  nucleoside diphosphate kinase III, chloroplastic/mitochondrial [KO:K00940] [EC:2.7.4.6]
9308510  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
9312922  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
9326107  probable apyrase 3 isoform X1 [KO:K01510] [EC:3.6.1.5]
9328859  probable apyrase 4 isoform X1 [KO:K01510] [EC:3.6.1.5]
110224709  LOW QUALITY PROTEIN: probable apyrase 5 [KO:K01510] [EC:3.6.1.5]
9309949  apyrase 2 [KO:K14641] [EC:3.6.1.5]
9320493  apyrase 1 [KO:K14641] [EC:3.6.1.5]
9303468  ectonucleotide pyrophosphatase/phosphodiesterase family member 3 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
9329662  nudix hydrolase 25 [KO:K26955] [EC:3.6.1.17]
9318852  CTP synthase [KO:K01937] [EC:6.3.4.2]
9317430  CTP synthase 1 isoform X2 [KO:K01937] [EC:6.3.4.2]
9306010  CTP synthase [KO:K01937] [EC:6.3.4.2]
9329710  CTP synthase isoform X1 [KO:K01937] [EC:6.3.4.2]
9308925  CTP synthase isoform X2 [KO:K01937] [EC:6.3.4.2]
9323582  uridine-cytidine kinase C [KO:K00876] [EC:2.7.1.48]
9305678  uridine kinase-like protein 4 [KO:K00876] [EC:2.7.1.48]
9306740  uridine kinase-like protein 1, chloroplastic [KO:K00876] [EC:2.7.1.48]
9311456  uridine kinase-like protein 5 [KO:K00876] [EC:2.7.1.48]
9313093  uridine kinase-like protein 2, chloroplastic [KO:K00876] [EC:2.7.1.48]
9330593  uridine kinase-like protein 3 isoform X1 [KO:K00876] [EC:2.7.1.48]
9326733  uridine-cytidine kinase C [KO:K00876] [EC:2.7.1.48]
9324961  uncharacterized protein LOC9324961 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
9306343  uncharacterized protein LOC9306343 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
9328367  probable uridine nucleosidase 2 isoform X1 [KO:K01240] [EC:3.2.2.3]
9317505  uridine nucleosidase 1 [KO:K01240] [EC:3.2.2.3]
9314014  uracil phosphoribosyltransferase, chloroplastic [KO:K00761] [EC:2.4.2.9]
9330319  uncharacterized protein LOC9330319 isoform X1 [KO:K16329] [EC:4.2.1.70]
9315827  7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X1 [KO:K24242] [EC:3.1.3.91]
9320051  cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
110226866  cytidine deaminase 3-like [KO:K01489] [EC:3.5.4.5]
9305494  cytidine deaminase 2 [KO:K01489] [EC:3.5.4.5]
9305497  probable inactive cytidine deaminase 9 [KO:K01489] [EC:3.5.4.5]
9303473  cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
9305493  cytidine deaminase 5 [KO:K01489] [EC:3.5.4.5]
9305495  cytidine deaminase 7 [KO:K01489] [EC:3.5.4.5]
9298409  cytidine deaminase 8 [KO:K01489] [EC:3.5.4.5]
9314640  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
9324272  LOW QUALITY PROTEIN: ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
9302917  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
9313084  ribonucleoside-diphosphate reductase small chain C [KO:K10808] [EC:1.17.4.1]
9321638  ribonucleoside-diphosphate reductase small chain A [KO:K10808] [EC:1.17.4.1]
9306735  ribonucleoside-diphosphate reductase small chain B [KO:K10808] [EC:1.17.4.1]
9321770  dCTP pyrophosphatase 1 [KO:K16904] [EC:3.6.1.12]
9316599  HD domain-containing protein 2 [KO:K07023] [EC:3.1.3.89]
9326735  HD domain-containing protein 2 homolog [KO:K07023] [EC:3.1.3.89]
9311980  deoxycytidylate deaminase [KO:K01493] [EC:3.5.4.12]
9300711  thymidylate kinase isoform X1 [KO:K00943] [EC:2.7.4.9]
9311889  deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
9318619  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
9310178  thymidine kinase b [KO:K00857] [EC:2.7.1.21]
9316457  bifunctional dihydrofolate reductase-thymidylate synthase 1 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
9322288  bifunctional dihydrofolate reductase-thymidylate synthase 1 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
9305209  bifunctional dihydrofolate reductase-thymidylate synthase 2 isoform X1 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
9321297  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic [KO:K00207] [EC:1.3.1.2]
9307588  dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
9302685  beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
aly00030  Pentose phosphate pathway
aly00220  Arginine biosynthesis
aly00250  Alanine, aspartate and glutamate metabolism
aly00280  Valine, leucine and isoleucine degradation
aly00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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