KEGG   PATHWAY: amg00020
Entry
amg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Alteromonas macleodii English Channel 673
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
amg00020  Citrate cycle (TCA cycle)
amg00020

Module
amg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:amg00020]
amg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:amg00020]
amg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:amg00020]
amg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:amg00020]
amg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:amg00020]
Other DBs
GO: 0006099
Organism
Alteromonas macleodii English Channel 673 [GN:amg]
Gene
AMEC673_09410  citrate synthase [KO:K01647] [EC:2.3.3.1]
AMEC673_01445  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
AMEC673_03325  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AMEC673_03350  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AMEC673_08570  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AMEC673_04470  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
AMEC673_09435  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AMEC673_09440  dihydrolipoyltranssuccinate transferase, component of the 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
AMEC673_14340  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AMEC673_09450  Succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
AMEC673_09445  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AMEC673_09425  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AMEC673_09430  succinate dehydrogenase catalytic subunit [KO:K00240] [EC:1.3.5.1]
AMEC673_09415  succinate dehydrogenase, cytochrome b subunit [KO:K00241]
AMEC673_09420  putative succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with sdhC [KO:K00242]
AMEC673_09760  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AMEC673_15255  fumarase [KO:K01679] [EC:4.2.1.2]
AMEC673_16555  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AMEC673_18915  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AMEC673_14350  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
AMEC673_14345  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
amg00010  Glycolysis / Gluconeogenesis
amg00053  Ascorbate and aldarate metabolism
amg00061  Fatty acid biosynthesis
amg00071  Fatty acid degradation
amg00190  Oxidative phosphorylation
amg00220  Arginine biosynthesis
amg00250  Alanine, aspartate and glutamate metabolism
amg00280  Valine, leucine and isoleucine degradation
amg00350  Tyrosine metabolism
amg00470  D-Amino acid metabolism
amg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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