KEGG   PATHWAY: amyy00470
Entry
amyy00470                   Pathway                                
Name
D-Amino acid metabolism - Amycolatopsis sp. YIM 10
Class
Metabolism; Metabolism of other amino acids
Pathway map
amyy00470  D-Amino acid metabolism
amyy00470

Other DBs
GO: 0046416
Organism
Amycolatopsis sp. YIM 10 [GN:amyy]
Gene
YIM_43890  alr2; Alanine racemase [KO:K01775] [EC:5.1.1.1]
YIM_20500  alr1; Alanine racemase [KO:K01775] [EC:5.1.1.1]
YIM_48250  ddl2; D-alanine--D-alanine ligase [KO:K01921] [EC:6.3.2.4]
YIM_10210  ddl1; D-alanine--D-alanine ligase [KO:K01921] [EC:6.3.2.4]
YIM_46520  purQ; Phosphoribosylformylglycinamidine synthase 1 [KO:K23265] [EC:6.3.5.3 3.5.1.2]
YIM_41620  murI; Glutamate racemase [KO:K01776] [EC:5.1.1.3]
YIM_13890  murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [KO:K01925] [EC:6.3.2.9]
YIM_17535  catB2; Muconate cycloisomerase 1 [KO:K19802] [EC:5.1.1.20 5.1.1.25]
YIM_40855  Aspartate racemase [KO:K01779] [EC:5.1.1.13]
YIM_25325  Aspartate racemase [KO:K01779] [EC:5.1.1.13]
YIM_45655  dcyD2; D-cysteine desulfhydrase [KO:K05396] [EC:4.4.1.15]
YIM_13210  dapF; Diaminopimelate epimerase [KO:K01778] [EC:5.1.1.7]
YIM_46105  lysA2; Diaminopimelate decarboxylase [KO:K01586] [EC:4.1.1.20]
YIM_06275  lysA1; Diaminopimelate decarboxylase [KO:K01586] [EC:4.1.1.20]
YIM_11495  btrK; L-glutamyl-[BtrI acyl-carrier protein] decarboxylase [KO:K01586] [EC:4.1.1.20]
YIM_31105  gbh; Guanidinobutyrase [KO:K25365] [EC:3.5.3.7 3.5.3.10]
YIM_20765  Proline racemase [KO:K01777] [EC:5.1.1.4]
YIM_20755  hcnB; Hydrogen cyanide synthase subunit HcnB [KO:K22549] [EC:1.5.99.-]
YIM_20745  hcnC3; Hydrogen cyanide synthase subunit HcnC precursor [KO:K21061] [EC:1.5.99.-]
YIM_20750  hcnA; Hydrogen cyanide synthase subunit HcnA [KO:K22550]
YIM_20760  dapAL; putative DapA-like lyase [KO:K21062] [EC:3.5.4.22]
YIM_23365  dadA; D-amino acid dehydrogenase small subunit [KO:K00285] [EC:1.4.5.1]
Compound
C00022  Pyruvate
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00077  L-Ornithine
C00079  L-Phenylalanine
C00084  Acetaldehyde
C00097  L-Cysteine
C00133  D-Alanine
C00134  Putrescine
C00135  L-Histidine
C00148  L-Proline
C00166  Phenylpyruvate
C00188  L-Threonine
C00217  D-Glutamate
C00402  D-Aspartate
C00431  5-Aminopentanoate
C00433  2,5-Dioxopentanoate
C00515  D-Ornithine
C00624  N-Acetyl-L-glutamate
C00666  LL-2,6-Diaminoheptanedioate
C00680  meso-2,6-Diaminoheptanedioate
C00692  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739  D-Lysine
C00740  D-Serine
C00763  D-Proline
C00792  D-Arginine
C00793  D-Cysteine
C00819  D-Glutamine
C00820  D-Threonine
C00855  D-Methionine
C00993  D-Alanyl-D-alanine
C01110  5-Amino-2-oxopentanoic acid
C01157  Hydroxyproline
C01180  4-Methylthio-2-oxobutanoic acid
C01667  Bacitracin
C01672  Cadaverine
C01726  D-Lombricine
C02237  5-Oxo-D-proline
C02265  D-Phenylalanine
C02855  N-Phospho-D-lombricine
C03239  6-Amino-2-oxohexanoate
C03341  2-Amino-4-oxopentanoic acid
C03440  cis-4-Hydroxy-D-proline
C03564  1-Pyrroline-2-carboxylate
C03771  5-Guanidino-2-oxopentanoate
C03933  5-D-Glutamyl-D-glutamyl-peptide
C03943  (2R,4S)-2,4-Diaminopentanoate
C04260  O-D-Alanyl-poly(ribitol phosphate)
C04282  1-Pyrroline-4-hydroxy-2-carboxylate
C04457  D-Alanyl-alanyl-poly(glycerolphosphate)
C05161  (2R,5S)-2,5-Diaminohexanoate
C05620  N-Acetyl-D-phenylalanine
C05825  2-Amino-5-oxohexanoate
C05939  Linatine
C05941  2-Oxo-4-hydroxy-5-aminovalerate
C05942  Pyrrole-2-carboxylate
C06419  D-Histidine
C22024  Staphylopine
C22025  (2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611  N-Acetyl-D-glutamate
Reference
PMID:33788945
  Authors
Miyamoto T, Homma H
  Title
D-Amino acid metabolism in bacteria.
  Journal
J Biochem 170:5-13 (2021)
DOI:10.1093/jb/mvab043
Reference
PMID:27230378
  Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
  Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
  Journal
Science 352:1105-9 (2016)
DOI:10.1126/science.aaf1018
Related
pathway
amyy00010  Glycolysis / Gluconeogenesis
amyy00020  Citrate cycle (TCA cycle)
amyy00250  Alanine, aspartate and glutamate metabolism
amyy00260  Glycine, serine and threonine metabolism
amyy00270  Cysteine and methionine metabolism
amyy00300  Lysine biosynthesis
amyy00310  Lysine degradation
amyy00330  Arginine and proline metabolism
amyy00340  Histidine metabolism
amyy00360  Phenylalanine metabolism
amyy00550  Peptidoglycan biosynthesis
amyy00620  Pyruvate metabolism
KO pathway
ko00470   
LinkDB

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