KEGG   PATHWAY: avr00020
Entry
avr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aeromonas veronii B565
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
avr00020  Citrate cycle (TCA cycle)
avr00020

Module
avr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:avr00020]
avr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:avr00020]
avr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:avr00020]
avr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:avr00020]
avr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:avr00020]
Other DBs
GO: 0006099
Organism
Aeromonas veronii B565 [GN:avr]
Gene
B565_1670  Citrate synthase [KO:K01647] [EC:2.3.3.1]
B565_1982  2-methylcitrate synthase/citrate synthase II [KO:K01659] [EC:2.3.3.5]
B565_0370  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratas e [KO:K01682] [EC:4.2.1.3 4.2.1.99]
B565_1369  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
B565_3077  Isocitrate dehydrogenase, NAD-dependent [KO:K00030] [EC:1.1.1.41]
B565_1675  Oxoglutarate dehydrogenase (Succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
B565_1676  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
B565_0366  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B565_1678  Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
B565_1677  Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
B565_1673  Succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B565_1674  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
B565_1671  Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
B565_1672  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
B565_0951  Fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
B565_0950  Fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
B565_0949  Fumarate reductase, 15 kDa hydrophobic protein [KO:K00246]
B565_0948  Fumarate reductase, 13 kDa hydrophobic protein [KO:K00247]
B565_2027  Fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
B565_3497  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B565_0405  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
B565_0364  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
B565_0365  Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
B565_0986  Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
B565_2688  ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
avr00010  Glycolysis / Gluconeogenesis
avr00053  Ascorbate and aldarate metabolism
avr00061  Fatty acid biosynthesis
avr00071  Fatty acid degradation
avr00190  Oxidative phosphorylation
avr00220  Arginine biosynthesis
avr00250  Alanine, aspartate and glutamate metabolism
avr00280  Valine, leucine and isoleucine degradation
avr00350  Tyrosine metabolism
avr00470  D-Amino acid metabolism
avr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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