KEGG   PATHWAY: bam00630
Entry
bam00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Burkholderia ambifaria AMMD
Class
Metabolism; Carbohydrate metabolism
Pathway map
bam00630  Glyoxylate and dicarboxylate metabolism
bam00630

Module
bam_M00012  Glyoxylate cycle [PATH:bam00630]
bam_M00621  Glycine cleavage system [PATH:bam00630]
Other DBs
GO: 0046487 0043648
Organism
Burkholderia ambifaria AMMD [GN:bam]
Gene
Bamb_2080  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Bamb_3879  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Bamb_2230  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
Bamb_6158  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
Bamb_1201  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Bamb_5971  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Bamb_4384  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Bamb_4942  malate synthase G [KO:K01638] [EC:2.3.3.9]
Bamb_2084  malate synthase A [KO:K01638] [EC:2.3.3.9]
Bamb_3309  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Bamb_3316  citrate synthase [KO:K01647] [EC:2.3.3.1]
Bamb_2582  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Bamb_6374  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Bamb_3305  aconitase [KO:K01681] [EC:4.2.1.3]
Bamb_5692  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Bamb_2824  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Bamb_1728  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Bamb_1892  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Bamb_5771  acetyl-CoA acetyltransferase / 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
Bamb_5969  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Bamb_1727  3-oxoacyl-[acyl-carrier-protein] reductase [KO:K00023] [EC:1.1.1.36]
Bamb_2823  3-oxoacyl-[acyl-carrier-protein] reductase [KO:K00023] [EC:1.1.1.36]
Bamb_3819  3-oxoacyl-[acyl-carrier-protein] reductase [KO:K00023] [EC:1.1.1.36]
Bamb_6218  MaoC domain protein dehydratase [KO:K17865] [EC:4.2.1.55]
Bamb_6221  crotonyl-CoA reductase [KO:K14446] [EC:1.3.1.85]
Bamb_4938  glycolate oxidase, subunit GlcD [KO:K00104] [EC:1.1.99.14]
Bamb_0624  FAD linked oxidase domain protein [KO:K00104] [EC:1.1.99.14]
Bamb_0623  FAD linked oxidase domain protein [KO:K11472] [EC:1.1.99.14]
Bamb_4939  FAD linked oxidase domain protein [KO:K11472] [EC:1.1.99.14]
Bamb_0622  protein of unknown function DUF224, cysteine-rich region domain protein [KO:K11473] [EC:1.1.99.14]
Bamb_4940  protein of unknown function DUF224, cysteine-rich region domain protein [KO:K11473] [EC:1.1.99.14]
Bamb_5612  Catalase [KO:K03781] [EC:1.11.1.6]
Bamb_0007  Catalase domain protein [KO:K03781] [EC:1.11.1.6]
Bamb_4327  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Bamb_6349  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Bamb_3006  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Bamb_1652  Gluconate 2-dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Bamb_0979  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Bamb_0440  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Bamb_0989  HAD-superfamily hydrolase, subfamily IA, variant 1 [KO:K01091] [EC:3.1.3.18]
Bamb_4242  Haloacid dehalogenase domain protein hydrolase [KO:K01091] [EC:3.1.3.18]
Bamb_4278  glutamine synthetase, catalytic region [KO:K01915] [EC:6.3.1.2]
Bamb_2186  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Bamb_2201  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Bamb_3041  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Bamb_0683  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Bamb_5200  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Bamb_5759  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Bamb_4497  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Bamb_0131  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
Bamb_0133  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Bamb_1974  pyridine nucleotide-disulfide oxidoreductase dimerization region [KO:K00382] [EC:1.8.1.4]
Bamb_2172  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bamb_6503  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bamb_1392  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bamb_1126  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bamb_0132  glycine cleavage system H protein [KO:K02437]
Bamb_1815  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
Bamb_1816  Hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
Bamb_1817  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
Bamb_1913  Glycerate kinase [KO:K00865] [EC:2.7.1.165]
Bamb_5440  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Bamb_4976  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Bamb_0556  2-keto-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Bamb_4014  Oxalate decarboxylase [KO:K01569] [EC:4.1.1.2]
Bamb_0894  formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
Bamb_3376  formate dehydrogenase (quinone-dependent) catalytic subunit [KO:K00123] [EC:1.17.1.9]
Bamb_0895  formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
Bamb_3377  formate dehydrogenase (quinone-dependent) catalytic subunit [KO:K00123] [EC:1.17.1.9]
Bamb_3378  formate dehydrogenase (quinone-dependent) iron-sulfur subunit [KO:K00124]
Bamb_0896  formate dehydrogenase beta subunit [KO:K00124]
Bamb_3379  formate dehydrogenase (quinone-dependent) cytochrome b subunit [KO:K00127]
Bamb_0897  formate dehydrogenase gamma subunit [KO:K00127]
Bamb_1602  esterase/lipase-like protein [KO:K01432] [EC:3.5.1.9]
Bamb_2625  Kynurenine formamidase [KO:K07130] [EC:3.5.1.9]
Bamb_2841  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Bamb_4486  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Bamb_2205  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bam00010  Glycolysis / Gluconeogenesis
bam00020  Citrate cycle (TCA cycle)
bam00030  Pentose phosphate pathway
bam00053  Ascorbate and aldarate metabolism
bam00071  Fatty acid degradation
bam00230  Purine metabolism
bam00250  Alanine, aspartate and glutamate metabolism
bam00260  Glycine, serine and threonine metabolism
bam00620  Pyruvate metabolism
bam00710  Carbon fixation by Calvin cycle
bam00750  Vitamin B6 metabolism
bam00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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