KEGG   PATHWAY: bbm00020
Entry
bbm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bordetella bronchiseptica MO149
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bbm00020  Citrate cycle (TCA cycle)
bbm00020

Module
bbm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bbm00020]
bbm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bbm00020]
bbm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bbm00020]
bbm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bbm00020]
bbm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bbm00020]
Other DBs
GO: 0006099
Organism
Bordetella bronchiseptica MO149 [GN:bbm]
Gene
BN115_3348  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
BN115_2322  conserved hypothetical protein [KO:K01647] [EC:2.3.3.1]
BN115_3357  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
BN115_1299  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BN115_1746  acnA; putative aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BN115_1752  acnB; putative aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BN115_3600  icdA; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
BN115_3340  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BN115_3339  odhB; 2-oxoglutarate dehydrogenase complex, E2 component [KO:K00658] [EC:2.3.1.61]
BN115_4370  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BN115_3338  odhL; 2-oxoglutarate dehydrogenase complex, E3 component [KO:K00382] [EC:1.8.1.4]
BN115_2138  putative pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
BN115_2584  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BN115_2954  sucD; succinyl-CoA synthetase, alpha chain [KO:K01902] [EC:6.2.1.5]
BN115_2955  sucC; Succinyl-CoA synthetase, beta chain [KO:K01903] [EC:6.2.1.5]
BN115_1763  putative acyl-CoA transferase [KO:K18118] [EC:2.8.3.18]
BN115_3351  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BN115_1558  sdhA; succinate dehydrogenase/fumarate reductase,flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BN115_3350  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BN115_3353  sdhC; succinate dehydrogenase cytochrome B subunit [KO:K00241]
BN115_3352  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
BN115_3770  putative fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BN115_0341  putative dehydratase [KO:K01677] [EC:4.2.1.2]
BN115_0340  conserved hypothetical protein [KO:K01678] [EC:4.2.1.2]
BN115_3743  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BN115_3355  mdH; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BN115_0583  putative pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BN115_2680  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
BN115_3343  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
BN115_2586  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
BN115_4378  probable 2-oxo acid dehydrogenases acyltransferase [KO:K00627] [EC:2.3.1.12]
BN115_2585  aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bbm00010  Glycolysis / Gluconeogenesis
bbm00053  Ascorbate and aldarate metabolism
bbm00061  Fatty acid biosynthesis
bbm00071  Fatty acid degradation
bbm00190  Oxidative phosphorylation
bbm00220  Arginine biosynthesis
bbm00250  Alanine, aspartate and glutamate metabolism
bbm00280  Valine, leucine and isoleucine degradation
bbm00350  Tyrosine metabolism
bbm00470  D-Amino acid metabolism
bbm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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