KEGG   PATHWAY: bcai00630
Entry
bcai00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paraburkholderia caribensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcai00630  Glyoxylate and dicarboxylate metabolism
bcai00630

Module
bcai_M00012  Glyoxylate cycle [PATH:bcai00630]
bcai_M00621  Glycine cleavage system [PATH:bcai00630]
Other DBs
GO: 0046487 0043648
Organism
Paraburkholderia caribensis [GN:bcai]
Gene
K788_0003142  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
K788_0003745  Isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
K788_0002254  Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
K788_0002231  Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
K788_0008225  Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
K788_0003740  malate synthase [KO:K01638] [EC:2.3.3.9]
K788_0007892  malate synthase [KO:K01638] [EC:2.3.3.9]
K788_0000600  Malate synthase G [KO:K01638] [EC:2.3.3.9]
K788_0000949  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
K788_0001960  Citrate synthase [KO:K01647] [EC:2.3.3.1]
K788_0003040  citrate synthase [KO:K01647] [EC:2.3.3.1]
K788_0005914  citrate synthase [KO:K01647] [EC:2.3.3.1]
K788_0002072  Citrate synthase [KO:K01647] [EC:2.3.3.1]
K788_0000946  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
K788_0005067  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
K788_0000943  Aconitate hydratase/2-methylisocitrate dehydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
K788_0006079  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
K788_0001577  malate thiokinase small subunit [KO:K08692] [EC:6.2.1.9]
K788_0001576  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K14067] [EC:6.2.1.9]
K788_0008145  3-ketoacyl-CoA thiolase/Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
K788_0004144  Acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
K788_0007971  3-ketoacyl-CoA thiolase/Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
K788_0007977  3-ketoacyl-CoA thiolase/Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
K788_00022560  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
K788_0002436  3-ketoacyl-CoA thiolase/Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
K788_0004528  3-oxoacyl-[acyl-carrier-protein] reductase [KO:K00023] [EC:1.1.1.36]
K788_0006258  3-oxoacyl-[acyl-carrier-protein] reductase [KO:K00023] [EC:1.1.1.36]
K788_0007972  3-oxoacyl-[acyl-carrier-protein] reductase [KO:K00023] [EC:1.1.1.36]
K788_0003005  MaoC-like dehydratase [KO:K17865] [EC:4.2.1.55]
K788_0006983  Acyl dehydratase [KO:K17865] [EC:4.2.1.55]
K788_0001579  Malyl-CoA lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
K788_0001189  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
K788_0004201  B12 binding domain of Methylmalonyl-CoA mutase [KO:K01849] [EC:5.4.99.2]
K788_0004200  Methylmalonyl-CoA mutase [KO:K01848] [EC:5.4.99.2]
K788_0005647  Glutamate mutase subunit E [KO:K19268] [EC:5.4.99.1]
K788_0005651  Methylaspartate mutase, S subunit [KO:K01846] [EC:5.4.99.1]
K788_0009107  Glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
K788_00021640  Glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
K788_0004842  Glycolate oxidase, subunit GlcD [KO:K00104] [EC:1.1.99.14]
K788_0000598  Glycolate oxidase, FAD-binding subunit GlcE [KO:K11472] [EC:1.1.99.14]
K788_0004261  Glycolate oxidase, FAD-binding subunit GlcE [KO:K11472] [EC:1.1.99.14]
K788_0004841  Glycolate oxidase, FAD-binding subunit GlcE [KO:K11472] [EC:1.1.99.14]
K788_0000599  Glycolate oxidase, iron-sulfur subunit GlcF [KO:K11473] [EC:1.1.99.14]
K788_0004260  Glycolate oxidase, iron-sulfur subunit GlcF [KO:K11473] [EC:1.1.99.14]
K788_00024565  glycolate oxidase subunit, GlcF [KO:K11473] [EC:1.1.99.14]
K788_0006345  Catalase [KO:K03781] [EC:1.11.1.6]
K788_0007021  Catalase [KO:K03781] [EC:1.11.1.6]
K788_0005286  Catalase [KO:K03781] [EC:1.11.1.6]
K788_0004591  Catalase [KO:K03781] [EC:1.11.1.6]
K788_0001252  Catalase [KO:K03781] [EC:1.11.1.6]
K788_0003240  Catalase [KO:K03781] [EC:1.11.1.6]
K788_0004835  Catalase [KO:K03781] [EC:1.11.1.6]
K788_0006271  D-3-phosphoglycerate dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
K788_0004158  D-3-phosphoglycerate dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
K788_0003883  2-ketogluconate 6-phosphate reductase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
K788_0001840  D-3-phosphoglycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
K788_0005525  Glyoxylate reductase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
K788_0000424  Hydroxypyruvate reductase [KO:K00018] [EC:1.1.1.29]
K788_00003165  Lactate dehydrogenase [KO:K00018] [EC:1.1.1.29]
K788_0001575  Hydroxypyruvate reductase [KO:K00018] [EC:1.1.1.29]
K788_0002670  Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
K788_0005535  protein similar to phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
K788_0001549  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
K788_0007391  Ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
K788_0007390  Ribulose bisphosphate carboxylase small chain [KO:K01602] [EC:4.1.1.39]
K788_0000842  Serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
K788_0001574  Serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
K788_0004944  Serine--pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
K788_0006530  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
K788_0005440  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
K788_0004615  Gamma-glutamyl-putrescine synthetase [KO:K01915] [EC:6.3.1.2]
K788_0001585  gamma-glutamylmethylamide synthetase [KO:K01915] [EC:6.3.1.2]
K788_0004914  Serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
K788_0002691  Serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
K788_0002714  Serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
K788_0007058  Serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
K788_0001573  Serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
K788_0003641  Glycine dehydrogenase, glycine cleavage system P protein [KO:K00281] [EC:1.4.4.2]
K788_0001541  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
K788_0001529  Sarcosine oxidase alpha subunit [KO:K00605] [EC:2.1.2.10]
K788_0003643  Aminomethyltransferase, glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
K788_0002417  Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
K788_0007470  Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
K788_0002812  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
K788_0003642  Glycine cleavage system H protein [KO:K02437]
K788_0002551  Glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
K788_0002896  Hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
K788_00013275  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
K788_0007455  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
K788_0004425  Glycerate kinase [KO:K00865] [EC:2.7.1.165]
K788_0000246  Aldehyde dehydrogenase A [KO:K07248] [EC:1.2.1.22 1.2.1.21]
K788_0001703  Aldehyde dehydrogenase A [KO:K07248] [EC:1.2.1.22 1.2.1.21]
K788_0006275  Tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
K788_0004271  Tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
K788_0006915  2-keto-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
K788_0003204  NAD-dependent formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
K788_0003362  NAD-dependent formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
K788_0005357  formate dehydrogenase (quinone-dependent) catalytic subunit [KO:K00123] [EC:1.17.1.9]
K788_00027060  formate dehydrogenase (quinone-dependent) catalytic subunit [KO:K00123] [EC:1.17.1.9]
K788_0003363  formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
K788_0005358  formate dehydrogenase (quinone-dependent) iron-sulfur subunit [KO:K00124]
K788_0003364  formate dehydrogenase beta subunit [KO:K00124]
K788_0005359  Formate dehydrogenase O gamma subunit [KO:K00127]
K788_0003365  formate dehydrogenase gamma subunit [KO:K00127]
K788_0005981  Kynurenine formamidase [KO:K07130] [EC:3.5.1.9]
K788_0002725  Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
K788_0001590  Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
K788_0004000  Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
K788_0002299  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
K788_0007275  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
K788_0007278  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
K788_0005250  Oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
K788_0005251  Formyl-coenzyme A transferase [KO:K07749] [EC:2.8.3.16]
K788_0005304  Formyl-coenzyme A transferase [KO:K07749] [EC:2.8.3.16]
K788_0005254  Formyl-coenzyme A transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bcai00010  Glycolysis / Gluconeogenesis
bcai00020  Citrate cycle (TCA cycle)
bcai00030  Pentose phosphate pathway
bcai00053  Ascorbate and aldarate metabolism
bcai00071  Fatty acid degradation
bcai00230  Purine metabolism
bcai00250  Alanine, aspartate and glutamate metabolism
bcai00260  Glycine, serine and threonine metabolism
bcai00620  Pyruvate metabolism
bcai00710  Carbon fixation by Calvin cycle
bcai00750  Vitamin B6 metabolism
bcai00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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