KEGG   PATHWAY: bced00020
Entry
bced00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia cepacia DDS 7H-2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bced00020  Citrate cycle (TCA cycle)
bced00020

Module
bced_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bced00020]
bced_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bced00020]
bced_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bced00020]
bced_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bced00020]
bced_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bced00020]
Other DBs
GO: 0006099
Organism
Burkholderia cepacia DDS 7H-2 [GN:bced]
Gene
DM42_4114  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DM42_2533  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
DM42_5283  2-methylcitrate synthase/citrate synthase II family protein [KO:K01659] [EC:2.3.3.5]
DM42_4125  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
DM42_6116  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DM42_2543  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
DM42_2544  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
DM42_189  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
DM42_188  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
DM42_476  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DM42_187  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DM42_2953  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DM42_2424  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
DM42_2423  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
DM42_3841  succinate CoA transferase family protein [KO:K18118] [EC:2.8.3.18]
DM42_4117  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DM42_7075  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
DM42_4116  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
DM42_4119  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DM42_4118  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DM42_2872  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
DM42_737  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
DM42_4121  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DM42_4980  mqo; malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
DM42_6379  phosphoenolpyruvate carboxykinase family protein [KO:K01596] [EC:4.1.1.32]
DM42_6058  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DM42_6436  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DM42_2951  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DM42_3263  acoC; dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system [KO:K00627] [EC:2.3.1.12]
DM42_2952  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bced00010  Glycolysis / Gluconeogenesis
bced00053  Ascorbate and aldarate metabolism
bced00061  Fatty acid biosynthesis
bced00071  Fatty acid degradation
bced00190  Oxidative phosphorylation
bced00220  Arginine biosynthesis
bced00250  Alanine, aspartate and glutamate metabolism
bced00280  Valine, leucine and isoleucine degradation
bced00350  Tyrosine metabolism
bced00470  D-Amino acid metabolism
bced00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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