KEGG   PATHWAY: bdl00020
Entry
bdl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia dolosa
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bdl00020  Citrate cycle (TCA cycle)
bdl00020

Module
bdl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bdl00020]
bdl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bdl00020]
bdl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bdl00020]
bdl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bdl00020]
bdl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bdl00020]
Other DBs
GO: 0006099
Organism
Burkholderia dolosa [GN:bdl]
Gene
AK34_547  merR regulatory family protein [KO:K01647] [EC:2.3.3.1]
AK34_4483  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
AK34_3199  2-methylcitrate synthase/citrate synthase II family protein [KO:K01659] [EC:2.3.3.5]
AK34_4494  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
AK34_5258  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AK34_557  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
AK34_558  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
AK34_1662  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
AK34_1661  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
AK34_1660  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AK34_972  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AK34_441  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
AK34_440  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
AK34_4225  succinate CoA transferase family protein [KO:K18118] [EC:2.8.3.18]
AK34_4486  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AK34_5075  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
AK34_4485  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
AK34_4488  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
AK34_4487  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
AK34_922  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
AK34_2085  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
AK34_4490  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AK34_3935  phosphoenolpyruvate carboxykinase family protein [KO:K01596] [EC:4.1.1.32]
AK34_970  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
AK34_1287  thioesterase domain protein [KO:K00627] [EC:2.3.1.12]
AK34_971  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bdl00010  Glycolysis / Gluconeogenesis
bdl00053  Ascorbate and aldarate metabolism
bdl00061  Fatty acid biosynthesis
bdl00071  Fatty acid degradation
bdl00190  Oxidative phosphorylation
bdl00220  Arginine biosynthesis
bdl00250  Alanine, aspartate and glutamate metabolism
bdl00280  Valine, leucine and isoleucine degradation
bdl00350  Tyrosine metabolism
bdl00470  D-Amino acid metabolism
bdl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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