KEGG   PATHWAY: bpl00020
Entry
bpl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia pseudomallei 1106a
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpl00020  Citrate cycle (TCA cycle)
bpl00020

Module
bpl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bpl00020]
bpl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bpl00020]
bpl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bpl00020]
bpl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bpl00020]
bpl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bpl00020]
Other DBs
GO: 0006099
Organism
Burkholderia pseudomallei 1106a [GN:bpl]
Gene
BURPS1106A_A2329  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BURPS1106A_0946  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
BURPS1106A_A0289  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
BURPS1106A_A2340  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BURPS1106A_0960  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BURPS1106A_1772  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
BURPS1106A_1773  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BURPS1106A_A3064  lpdA; 2-oxoisovalerate dehydrogenase complex E3 component, dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BURPS1106A_2665  lpdA; pyruvate dehydrogenase complex E3 component, dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BURPS1106A_1774  lpdA; 2-oxoglutarate dehydrogenase, E3 component, dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BURPS1106A_0818  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
BURPS1106A_0817  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
BURPS1106A_A0696  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
BURPS1106A_A2332  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BURPS1106A_A2331  sdhB; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BURPS1106A_A3049  succinate dehydrogenase and fumarate reductase family iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BURPS1106A_A2334  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BURPS1106A_A2333  sdhD; succinate dehydrogenase, hydrophobic membrane anchor subunit [KO:K00242]
BURPS1106A_A0527  fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
BURPS1106A_2886  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BURPS1106A_A2336  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BURPS1106A_1475  pckG; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
BURPS1106A_A2324  2-oxo-acid dehydrogenase, E1 component [KO:K00163] [EC:1.2.4.1]
BURPS1106A_2667  pdhA; pyruvate dehydrogenase complex E1 component [KO:K00163] [EC:1.2.4.1]
BURPS1106A_2666  pdhB; pyruvate dehydrogenase complex E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bpl00010  Glycolysis / Gluconeogenesis
bpl00053  Ascorbate and aldarate metabolism
bpl00061  Fatty acid biosynthesis
bpl00071  Fatty acid degradation
bpl00190  Oxidative phosphorylation
bpl00220  Arginine biosynthesis
bpl00250  Alanine, aspartate and glutamate metabolism
bpl00280  Valine, leucine and isoleucine degradation
bpl00350  Tyrosine metabolism
bpl00470  D-Amino acid metabolism
bpl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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