KEGG   PATHWAY: btei00020
Entry
btei00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia territorii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
btei00020  Citrate cycle (TCA cycle)
btei00020

Module
btei_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:btei00020]
btei_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:btei00020]
btei_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:btei00020]
btei_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:btei00020]
btei_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:btei00020]
Other DBs
GO: 0006099
Organism
Burkholderia territorii [GN:btei]
Gene
WS51_23115  citrate synthase [KO:K01647] [EC:2.3.3.1]
WS51_03130  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
WS51_10210  citrate synthase/methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
WS51_03075  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
WS51_26705  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
WS51_23060  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
WS51_23065  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
WS51_17805  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
WS51_17810  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
WS51_16585  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WS51_17815  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WS51_21015  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WS51_23655  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
WS51_23660  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
WS51_03945  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
WS51_03115  fumarate reductase [KO:K00239] [EC:1.3.5.1]
WS51_27210  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
WS51_03120  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
WS51_03105  succinate dehydrogenase [KO:K00241]
WS51_03110  succinate dehydrogenase [KO:K00242]
WS51_21335  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
WS51_15695  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
WS51_28535  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
WS51_03095  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
WS51_00615  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
WS51_05550  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
WS51_21025  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
WS51_27935  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
WS51_27930  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
WS51_19585  acetoin dehydrogenase [KO:K00627] [EC:2.3.1.12]
WS51_27925  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
WS51_21020  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
btei00010  Glycolysis / Gluconeogenesis
btei00053  Ascorbate and aldarate metabolism
btei00061  Fatty acid biosynthesis
btei00071  Fatty acid degradation
btei00190  Oxidative phosphorylation
btei00220  Arginine biosynthesis
btei00250  Alanine, aspartate and glutamate metabolism
btei00280  Valine, leucine and isoleucine degradation
btei00350  Tyrosine metabolism
btei00470  D-Amino acid metabolism
btei00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system