KEGG   PATHWAY: btj00020
Entry
btj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia thailandensis E444
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
btj00020  Citrate cycle (TCA cycle)
btj00020

Module
btj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:btj00020]
btj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:btj00020]
btj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:btj00020]
btj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:btj00020]
btj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:btj00020]
Other DBs
GO: 0006099
Organism
Burkholderia thailandensis E444 [GN:btj]
Gene
BTJ_4989  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BTJ_4130  2-methylcitrate synthase/citrate synthase II family protein [KO:K01659] [EC:2.3.3.5]
BTJ_4978  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BTJ_1662  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BTJ_990  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
BTJ_989  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BTJ_988  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTJ_4243  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTJ_271  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTJ_1779  sucD; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
BTJ_1780  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
BTJ_3815  succinate CoA transferase family protein [KO:K18118] [EC:2.8.3.18]
BTJ_4986  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BTJ_4690  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
BTJ_4987  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
BTJ_4984  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BTJ_4985  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BTJ_3950  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
BTJ_80  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BTJ_3528  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BTJ_4982  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BTJ_1222  phosphoenolpyruvate carboxykinase family protein [KO:K01596] [EC:4.1.1.32]
BTJ_269  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BTJ_4993  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BTJ_5251  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
BTJ_5253  e3 binding domain protein [KO:K00627] [EC:2.3.1.12]
BTJ_270  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
btj00010  Glycolysis / Gluconeogenesis
btj00053  Ascorbate and aldarate metabolism
btj00061  Fatty acid biosynthesis
btj00071  Fatty acid degradation
btj00190  Oxidative phosphorylation
btj00220  Arginine biosynthesis
btj00250  Alanine, aspartate and glutamate metabolism
btj00280  Valine, leucine and isoleucine degradation
btj00350  Tyrosine metabolism
btj00470  D-Amino acid metabolism
btj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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