KEGG   PATHWAY: btq00020
Entry
btq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia thailandensis 2002721723
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
btq00020  Citrate cycle (TCA cycle)
btq00020

Module
btq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:btq00020]
btq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:btq00020]
btq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:btq00020]
btq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:btq00020]
btq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:btq00020]
Other DBs
GO: 0006099
Organism
Burkholderia thailandensis 2002721723 [GN:btq]
Gene
BTQ_3957  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BTQ_772  merR regulatory family protein [KO:K01647] [EC:2.3.3.1]
BTQ_5474  2-methylcitrate synthase/citrate synthase II family protein [KO:K01659] [EC:2.3.3.5]
BTQ_3946  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BTQ_779  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BTQ_1466  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
BTQ_1467  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BTQ_2048  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTQ_1468  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTQ_5588  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTQ_665  sucD; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
BTQ_664  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
BTQ_5185  succinate CoA transferase family protein [KO:K18118] [EC:2.8.3.18]
BTQ_3954  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BTQ_3955  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
BTQ_3655  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
BTQ_3952  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BTQ_3953  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BTQ_5298  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
BTQ_2236  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BTQ_3950  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BTQ_4904  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BTQ_1211  phosphoenolpyruvate carboxykinase family protein [KO:K01596] [EC:4.1.1.32]
BTQ_2050  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BTQ_3961  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BTQ_4215  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
BTQ_2049  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
BTQ_4217  e3 binding domain protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
btq00010  Glycolysis / Gluconeogenesis
btq00053  Ascorbate and aldarate metabolism
btq00061  Fatty acid biosynthesis
btq00071  Fatty acid degradation
btq00190  Oxidative phosphorylation
btq00220  Arginine biosynthesis
btq00250  Alanine, aspartate and glutamate metabolism
btq00280  Valine, leucine and isoleucine degradation
btq00350  Tyrosine metabolism
btq00470  D-Amino acid metabolism
btq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system