KEGG   PATHWAY: btz00020
Entry
btz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia thailandensis H0587
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
btz00020  Citrate cycle (TCA cycle)
btz00020

Module
btz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:btz00020]
btz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:btz00020]
btz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:btz00020]
btz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:btz00020]
btz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:btz00020]
Other DBs
GO: 0006099
Organism
Burkholderia thailandensis H0587 [GN:btz]
Gene
BTL_3457  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BTL_2948  merR regulatory family protein [KO:K01647] [EC:2.3.3.1]
BTL_4145  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
BTL_4941  2-methylcitrate synthase/citrate synthase II family protein [KO:K01659] [EC:2.3.3.5]
BTL_3446  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BTL_2942  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BTL_2231  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
BTL_2230  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BTL_5053  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTL_1571  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTL_2229  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BTL_3057  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
BTL_3058  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
BTL_4671  succinate CoA transferase family protein [KO:K18118] [EC:2.8.3.18]
BTL_3454  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BTL_5477  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
BTL_3455  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
BTL_3452  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BTL_3453  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BTL_4769  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
BTL_1378  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BTL_3450  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BTL_4377  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BTL_2457  phosphoenolpyruvate carboxykinase family protein [KO:K01596] [EC:4.1.1.32]
BTL_3461  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BTL_1569  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BTL_3715  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
BTL_3717  e3 binding domain protein [KO:K00627] [EC:2.3.1.12]
BTL_1570  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
btz00010  Glycolysis / Gluconeogenesis
btz00053  Ascorbate and aldarate metabolism
btz00061  Fatty acid biosynthesis
btz00071  Fatty acid degradation
btz00190  Oxidative phosphorylation
btz00220  Arginine biosynthesis
btz00250  Alanine, aspartate and glutamate metabolism
btz00280  Valine, leucine and isoleucine degradation
btz00350  Tyrosine metabolism
btz00470  D-Amino acid metabolism
btz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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