KEGG   PATHWAY: buo00020
Entry
buo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Caballeronia insecticola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
buo00020  Citrate cycle (TCA cycle)
buo00020

Module
buo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:buo00020]
buo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:buo00020]
buo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:buo00020]
buo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:buo00020]
buo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:buo00020]
Other DBs
GO: 0006099
Organism
Caballeronia insecticola [GN:buo]
Gene
BRPE64_DCDS06910  putative citrate synthase [KO:K01647] [EC:2.3.3.1]
BRPE64_BCDS12920  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
BRPE64_BCDS03630  citrate synthase [KO:K01659] [EC:2.3.3.5]
BRPE64_BCDS13010  citrate synthase [KO:K01659] [EC:2.3.3.5]
BRPE64_BCDS13040  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BRPE64_ACDS05700  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BRPE64_BCDS00970  isocitrate dehydrogenase NADP-dependent [KO:K00031] [EC:1.1.1.42]
BRPE64_ACDS16660  sucA; 2-oxoglutarate dehydrogenase E1 subunit [KO:K00164] [EC:1.2.4.2]
BRPE64_ACDS16650  sucB; 2-oxoglutarate dehydrogenase E2 subunit dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BRPE64_ACDS16640  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BRPE64_ACDS10230  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BRPE64_BCDS06060  probable dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BRPE64_BCDS01880  FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
BRPE64_DCDS12120  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BRPE64_ECDS00190  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BRPE64_ACDS04750  succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
BRPE64_BCDS02470  succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
BRPE64_ACDS04740  succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
BRPE64_BCDS02480  hypothetical protein [KO:K01903] [EC:6.2.1.5]
BRPE64_BCDS12950  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BRPE64_CCDS01690  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BRPE64_BCDS12940  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BRPE64_CCDS01700  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BRPE64_BCDS12970  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
BRPE64_CCDS01670  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
BRPE64_BCDS12960  succinate dehydrogenase subunit D [KO:K00242]
BRPE64_CCDS01680  succinate dehydrogenase subunit D [KO:K00242]
BRPE64_ACDS10500  hydro-lyase Fe-S type tartrate/fumarate subfamily alpha subunit [KO:K01676] [EC:4.2.1.2]
BRPE64_CCDS05970  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BRPE64_ACDS20200  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BRPE64_BCDS12990  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BRPE64_ACDS00190  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
BRPE64_BCDS09720  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
BRPE64_ACDS10210  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
BRPE64_ACDS10220  aceF; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
BRPE64_DCDS00160  alpha/beta hydrolase fold protain Biotin/lipoyl attachment [KO:K00627] [EC:2.3.1.12]
BRPE64_ECDS00180  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
buo00010  Glycolysis / Gluconeogenesis
buo00053  Ascorbate and aldarate metabolism
buo00061  Fatty acid biosynthesis
buo00071  Fatty acid degradation
buo00190  Oxidative phosphorylation
buo00220  Arginine biosynthesis
buo00250  Alanine, aspartate and glutamate metabolism
buo00280  Valine, leucine and isoleucine degradation
buo00350  Tyrosine metabolism
buo00470  D-Amino acid metabolism
buo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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