KEGG   PATHWAY: bxe00020
Entry
bxe00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Paraburkholderia xenovorans LB400
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bxe00020  Citrate cycle (TCA cycle)
bxe00020

Module
bxe_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bxe00020]
bxe_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bxe00020]
bxe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bxe00020]
bxe_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bxe00020]
bxe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bxe00020]
Other DBs
GO: 0006099
Organism
Paraburkholderia xenovorans LB400 [GN:bxe]
Gene
Bxe_B2890  citrate synthase [KO:K01647] [EC:2.3.3.1]
Bxe_C0986  Putative citrate synthase [KO:K01647] [EC:2.3.3.1]
Bxe_B1134  citrate synthase [KO:K01647] [EC:2.3.3.1]
Bxe_A0781  Bifunctional --transcriptional regulator, MerR family / Citrate synthase [KO:K01647] [EC:2.3.3.1]
Bxe_A1721  Excisionase/Xis, DNA-binding protein [KO:K01647] [EC:2.3.3.1]
Bxe_A2716  Putative citrate synthase [KO:K01647] [EC:2.3.3.1]
Bxe_B2903  aconitase [KO:K01681] [EC:4.2.1.3]
Bxe_B1533  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Bxe_B0532  Isocitrate dehydrogenase NADP-dependent, monomeric type [KO:K00031] [EC:1.1.1.42]
Bxe_A0797  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Bxe_C0665  Isocitrate dehydrogenase (NAD+) [KO:K00030] [EC:1.1.1.41]
Bxe_A2812  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Bxe_A2811  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
Bxe_C0853  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bxe_B0582  putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bxe_A1543  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bxe_A2810  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bxe_A0675  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Bxe_A0674  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Bxe_B1860  Acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
Bxe_B0292  Acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
Bxe_B0397  Acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
Bxe_B2893  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Bxe_B2892  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Bxe_B2895  succinate dehydrogenase subunit C [KO:K00241]
Bxe_B2894  succinate dehydrogenase subunit D [KO:K00242]
Bxe_A3136  fumarase [KO:K01676] [EC:4.2.1.2]
Bxe_A1038  fumarase [KO:K01679] [EC:4.2.1.2]
Bxe_B2898  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Bxe_A4422  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Bxe_A1541  2-oxo-acid dehydrogenase E1 component, homodimeric type [KO:K00163] [EC:1.2.4.1]
Bxe_A4472  2-oxo-acid dehydrogenase E1 component homodimeric type [KO:K00163] [EC:1.2.4.1]
Bxe_C1063  2-oxo-acid dehydrogenase E1 component homodimeric type [KO:K00163] [EC:1.2.4.1]
Bxe_B0315  putative acetoin dehydrogenase [KO:K00627] [EC:2.3.1.12]
Bxe_C0854  dihydrolipoamide acyltransferase (E2) component of 2-oxoacid dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Bxe_A1542  Dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bxe00010  Glycolysis / Gluconeogenesis
bxe00053  Ascorbate and aldarate metabolism
bxe00061  Fatty acid biosynthesis
bxe00071  Fatty acid degradation
bxe00190  Oxidative phosphorylation
bxe00220  Arginine biosynthesis
bxe00250  Alanine, aspartate and glutamate metabolism
bxe00280  Valine, leucine and isoleucine degradation
bxe00350  Tyrosine metabolism
bxe00470  D-Amino acid metabolism
bxe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system