KEGG   PATHWAY: cme03008
Entry
cme03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Cyanidioschyzon merolae
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
cme03008  Ribosome biogenesis in eukaryotes
cme03008

Organism
Cyanidioschyzon merolae [GN:cme]
Gene
CYME_CMM005C  probable protein kinase CK2 regulatory subunit CK2B1 [KO:K03115]
CYME_CMP128C  casein kinase II, alpha subunit [KO:K03097] [EC:2.7.11.1]
CYME_CMT453C  similar to nucleolar RNA-associated protein NRAP [KO:K14544]
CYME_CMR371C  similar to rRNA processing protein 7 [KO:K14545]
CYME_CMQ382C  similar to U3 snoRNP component Utp15p [KO:K14549]
CYME_CMT444C  hypothetical protein [KO:K14552]
CYME_CMJ206C  hypothetical protein [KO:K14553]
CYME_CMG105C  probable WD-repeat membrane protein [KO:K14554]
CYME_CME044C  unknown WD repeat protein [KO:K14556]
CYME_CMG184C  similar to U3 snoRNP component Utp6p [KO:K14557]
CYME_CMS199C  U3 snoRNP component PWP2 [KO:K14558]
CYME_CMB019C  similar to U3 snoRNP component Mpp10 [KO:K14559]
CYME_CMC010C  similar to U3 snoRNP component Imp3p [KO:K14560]
CYME_CMQ071C  probable U3 snoRNP component Imp4p [KO:K14561]
CYME_CMN074C  box C/D snoRNP rRNA methylase component fibrillarin [KO:K14563] [EC:2.1.1.-]
CYME_CMQ185C  box C/D snoRNP component Nop56 [KO:K14564]
CYME_CMT605C  box C/D snoRNP component Nop58 [KO:K14565]
CYME_CMP335C  box C/D snoRNP and U4 snRNP component Snu13p [KO:K12845]
CYME_CMM044C  box H/ACA snoRNP rRNA pseudouridine syntase component dyskerin [KO:K11131] [EC:5.4.99.-]
CYME_CMN132C  box H/ACA snoRNP component NHP2 [KO:K11129]
CYME_CMI184C  box H/ACA snoRNP component GAR1 [KO:K11128]
CYME_CMH198C  box H/ACA snoRNP component Nop10p [KO:K11130]
CYME_CML046C  hypothetical protein [KO:K14566]
CYME_CMI018C  similar to U3 snoRNP component Utp14p [KO:K14567]
CYME_CMC063C  probable ribosome biogenesis protein NEP1 [KO:K14568] [EC:2.1.1.260]
CYME_CMS060C  hypothetical protein [KO:K14569]
CYME_CMH278C  hypothetical protein [KO:K14521] [EC:2.3.1.-]
CYME_CMQ312C  hypothetical protein [KO:K11108]
CYME_CMR143C  ribonuclease P protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
CYME_CMG096C  ribonuclease P protein subunit POP4 [KO:K03538] [EC:3.1.26.5]
CYME_CMO008C  ribonuclease P protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
CYME_CMM152C  ribonuclease P protein subunit P30 [KO:K03539] [EC:3.1.26.5]
CYME_CMT315C  probable oligoribonuclease, mitochondrial precursor [KO:K13288] [EC:3.1.-.-]
CYME_CMR447C  deoxyribonuclease [KO:K12618] [EC:3.1.13.-]
CYME_CMQ316C  exonuclease [KO:K12618] [EC:3.1.13.-]
CYME_CMS302C  5'->3' exoribonuclease [KO:K12619] [EC:3.1.13.-]
CYME_CMB146C  probable nucleolar GTP-binding protein Nog1 [KO:K06943]
CYME_CMT130C  GTP-binding protein of Nug1 family [KO:K14537]
CYME_CMT043C  GTP-binding protein of Nug1 family [KO:K14538]
CYME_CMS124C  valosin-containing protein [KO:K14571]
CYME_CMJ083C  similar to midasin Mdn1p [KO:K14572]
CYME_CMR019C  similar to ribosomal processing, RNA binding, nucleolar protein Nop77 [KO:K14573]
CYME_CMJ120C  putative nin one binding protein [KO:K11883]
CYME_CMT257C  small GTP-binding protein of Ran family [KO:K07936]
CYME_CMS276C  exportin 1 [KO:K14290]
CYME_CMT194C  nonsense-mediated mRNA decay protein 3 [KO:K07562]
CYME_CMT351C  eukaryotic translation initiation factor eIF-6 [KO:K03264]
CYME_CMG027C  hypothetical protein [KO:K14574]
CYME_CMI098C  similar to eukaryotic translation elongation factor 2 [KO:K14536] [EC:3.6.5.-]
CYME_CMQ345C  GTP-binding protein of Nug1 family [KO:K14539] [EC:3.6.1.-]
CYME_CMI163C  similar to TATA box binding protein (TBP)-associated factor TAF9 [KO:K18532] [EC:2.7.4.3]
CYME_CMG167C  cell cycle controlling protein kinase RIO [KO:K07178] [EC:2.7.11.1]
CYME_CMN167C  RIO-like serine/threonine protein kinase [KO:K07179] [EC:2.7.11.1]
CYME_CMQ401R  18S ribosomal RNA [KO:K01979]
CYME_CMQ305R  18S ribosomal RNA [KO:K01979]
CYME_CMR208R  18S ribosomal RNA [KO:K01979]
CymeCr210  rrn16; 16S ribosomal RNA [KO:K01979]
CYME_CMQ304R  5.8S ribosomal RNA [KO:K01986]
CYME_CMQ402R  5.8S ribosomal RNA [KO:K01986]
CYME_CMR207R  5.8S ribosomal RNA [KO:K01986]
CYME_CMQ303R  28S ribosomal RNA [KO:K01982]
CYME_CMQ403R  28S ribosomal RNA [KO:K01982]
CYME_CMR206R  28S ribosomal RNA [KO:K01982]
CymeCr212  rrn5; 5S ribosomal RNA [KO:K01981]
CYME_CML038R  5S ribosomal RNA [KO:K01981]
CYME_CML060R  5S ribosomal RNA [KO:K01981]
CYME_CMM232R  5S ribosomal RNA [KO:K01981]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
cme03010  Ribosome
KO pathway
ko03008   
LinkDB

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