KEGG   PATHWAY: ctig03008
Entry
ctig03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Crotalus tigris (Tiger rattlesnake)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
ctig03008  Ribosome biogenesis in eukaryotes
ctig03008

Organism
Crotalus tigris (Tiger rattlesnake) [GN:ctig]
Gene
120313446  CSNK2B; casein kinase II subunit beta isoform X1 [KO:K03115]
120312636  CSNK2A2; casein kinase II subunit alpha' [KO:K03097] [EC:2.7.11.1]
120313638  CSNK2A1; casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
120298015  casein kinase II subunit alpha-like isoform X1 [KO:K03097] [EC:2.7.11.1]
120316635  casein kinase II subunit alpha-like [KO:K03097] [EC:2.7.11.1]
120310769  NOL6; nucleolar protein 6 isoform X1 [KO:K14544]
120304713  RRP7A; ribosomal RNA-processing protein 7 homolog A [KO:K14545]
120305343  WDR43; WD repeat-containing protein 43 [KO:K14546]
120302436  UTP4; U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
120297759  UTP15; U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
120312372  HEATR1; HEAT repeat-containing protein 1 [KO:K14550]
120298316  WDR75; WD repeat-containing protein 75 isoform X1 [KO:K14552]
120308276  UTP18; U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
120318075  WDR36; WD repeat-containing protein 36 isoform X1 [KO:K14554]
120313554  TBL3; transducin beta-like protein 3 [KO:K14555]
120298766  WDR3; WD repeat-containing protein 3 isoform X1 [KO:K14556]
120308095  UTP6; U3 small nucleolar RNA-associated protein 6 homolog isoform X1 [KO:K14557]
120319445  PWP2; periodic tryptophan protein 2 homolog [KO:K14558]
120306591  MPHOSPH10; U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
120298000  IMP3; U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
120297588  IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
120300042  FBL; rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
120303905  NOP56; nucleolar protein 56 [KO:K14564]
120313095  NOP58; nucleolar protein 58 [KO:K14565]
120304699  SNU13; NHP2-like protein 1 [KO:K12845]
120302658  DKC1; H/ACA ribonucleoprotein complex subunit DKC1 [KO:K11131] [EC:5.4.99.-]
120304022  NHP2; H/ACA ribonucleoprotein complex subunit 2 [KO:K11129]
120305923  GAR1; H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
120310995  NOP10; H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
120311781  FCF1; rRNA-processing protein FCF1 homolog [KO:K14566]
120302493  UTP14A; U3 small nucleolar RNA-associated protein 14 homolog A isoform X1 [KO:K14567]
120313872  DROSHA; ribonuclease 3 isoform X1 [KO:K03685] [EC:3.1.26.3]
120306112  EMG1; ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
120306831  BMS1; ribosome biogenesis protein BMS1 homolog isoform X1 [KO:K14569]
120314117  NAT10; RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
120317692  RCL1; RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
120301511  POP1; ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
120302803  RPP38; ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
120300923  POP4; ribonuclease P protein subunit p29 isoform X1 [KO:K03538] [EC:3.1.26.5]
120297938  POP5; ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
120305529  RPP25; ribonuclease P protein subunit p25 [KO:K14525] [EC:3.1.26.5]
120313463  RPP25L; ribonuclease P protein subunit p25-like protein isoform X1 [KO:K14525] [EC:3.1.26.5]
120299713  POP7; ribonuclease P protein subunit p20 [KO:K14527] [EC:3.1.26.5]
120304899  RPP30; ribonuclease P protein subunit p30 isoform X1 [KO:K03539] [EC:3.1.26.5]
120311379  ribonuclease P protein subunit p40-like isoform X1 [KO:K14530] [EC:3.1.26.5]
120307728  ribonuclease P protein subunit p40-like isoform X1 [KO:K14530] [EC:3.1.26.5]
120314686  REXO1; RNA exonuclease 1 homolog isoform X1 [KO:K14570] [EC:3.1.-.-]
120315757  REXO5; RNA exonuclease 5 isoform X1 [KO:K14570] [EC:3.1.-.-]
120311240  REXO2; oligoribonuclease, mitochondrial isoform X1 [KO:K13288] [EC:3.1.-.-]
120314382  XRN1; 5'-3' exoribonuclease 1 isoform X1 [KO:K12618] [EC:3.1.13.-]
120300225  XRN2; 5'-3' exoribonuclease 2 [KO:K12619] [EC:3.1.13.-]
120312161  GTPBP4; nucleolar GTP-binding protein 1 isoform X1 [KO:K06943]
120301589  GNL2; nucleolar GTP-binding protein 2 [KO:K14537]
120312761  GNL3; guanine nucleotide-binding protein-like 3 isoform X1 [KO:K14538]
120318432  GNL3L; guanine nucleotide-binding protein-like 3-like protein isoform X1 [KO:K14538]
120307216  NVL; nuclear valosin-containing protein-like isoform X1 [KO:K14571]
120307896  MDN1; midasin isoform X1 [KO:K14572]
120303710  RBM28; RNA-binding protein 28 isoform X1 [KO:K14573]
120302463  NOB1; RNA-binding protein NOB1 [KO:K11883]
120314339  RAN; GTP-binding nuclear protein Ran [KO:K07936]
120309894  XPO1; exportin-1 isoform X1 [KO:K14290]
120316000  NMD3; 60S ribosomal export protein NMD3 [KO:K07562]
120317026  NXF1; nuclear RNA export factor 1 [KO:K14284]
120310371  NXT2; NTF2-related export protein 2 isoform X1 [KO:K14285]
120297036  EIF6; eukaryotic translation initiation factor 6 [KO:K03264]
120309243  SBDS; ribosome maturation protein SBDS [KO:K14574]
120320388  ribosome maturation protein SBDS [KO:K14574]
120315140  EFL1; elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
120307162  LSG1; large subunit GTPase 1 homolog isoform X1 [KO:K14539] [EC:3.6.1.-]
120297494  SPATA5; ATPase family protein 2 homolog isoform X1 [KO:K14575]
120297753  AK6; adenylate kinase isoenzyme 6 isoform X1 [KO:K18532] [EC:2.7.4.3]
120311163  RIOK1; serine/threonine-protein kinase RIO1 isoform X1 [KO:K07178] [EC:2.7.11.1]
120306710  RIOK2; serine/threonine-protein kinase RIO2 isoform X1 [KO:K07179] [EC:2.7.11.1]
120298527  18S ribosomal RNA [KO:K01979]
120296963  18S ribosomal RNA [KO:K01979]
120298526  5.8S ribosomal RNA [KO:K01986]
120298536  28S ribosomal RNA [KO:K01982]
120307423  5S ribosomal RNA [KO:K01981]
120314031  5S ribosomal RNA [KO:K01981]
120297977  small nucleolar RNA U3 [KO:K14483]
120297978  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
ctig03010  Ribosome
KO pathway
ko03008   
LinkDB

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