KEGG   PATHWAY: cuu00020
Entry
cuu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Cupriavidus sp. USMAA2-4
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cuu00020  Citrate cycle (TCA cycle)
cuu00020

Module
cuu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cuu00020]
cuu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cuu00020]
cuu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cuu00020]
cuu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cuu00020]
cuu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cuu00020]
Other DBs
GO: 0006099
Organism
Cupriavidus sp. USMAA2-4 [GN:cuu]
Gene
BKK79_21195  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
BKK79_20660  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
BKK79_34375  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
BKK79_17080  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BKK79_02555  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
BKK79_17035  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
BKK79_17020  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BKK79_22875  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BKK79_30300  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
BKK79_14365  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BKK79_18440  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BKK79_18445  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BKK79_22415  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BKK79_19185  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BKK79_18450  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BKK79_35125  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BKK79_07600  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BKK79_07605  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BKK79_19075  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
BKK79_17065  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BKK79_17070  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BKK79_17055  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BKK79_17060  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BKK79_17540  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BKK79_25145  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BKK79_17045  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BKK79_35025  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BKK79_11175  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
BKK79_22575  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BKK79_19170  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BKK79_22410  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
BKK79_19175  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
BKK79_25980  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cuu00010  Glycolysis / Gluconeogenesis
cuu00053  Ascorbate and aldarate metabolism
cuu00061  Fatty acid biosynthesis
cuu00071  Fatty acid degradation
cuu00190  Oxidative phosphorylation
cuu00220  Arginine biosynthesis
cuu00250  Alanine, aspartate and glutamate metabolism
cuu00280  Valine, leucine and isoleucine degradation
cuu00350  Tyrosine metabolism
cuu00470  D-Amino acid metabolism
cuu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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