KEGG   PATHWAY: dalk00020
Entry
dalk00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Desulfosarcina alkanivorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dalk00020  Citrate cycle (TCA cycle)
dalk00020

Module
dalk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dalk00020]
dalk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dalk00020]
dalk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dalk00020]
dalk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dalk00020]
Other DBs
GO: 0006099
Organism
Desulfosarcina alkanivorans [GN:dalk]
Gene
DSCA_28240  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DSCA_55690  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
DSCA_07410  acoA; aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
DSCA_65030  citC; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
DSCA_29720  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
DSCA_29710  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
DSCA_29700  lpdA-1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSCA_34570  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSCA_42790  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSCA_04860  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSCA_23980  korA_1; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSCA_24130  korA_2; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSCA_32460  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSCA_62770  korA_3; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSCA_04870  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSCA_23970  korB_1; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSCA_24120  korB_2; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSCA_32450  hypothetical protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSCA_62780  korB_3; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSCA_04880  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
DSCA_23960  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
DSCA_24110  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
DSCA_62790  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
DSCA_04850  tungsten formylmethanofuran dehydrogenase subunit G [KO:K00176] [EC:1.2.7.3]
DSCA_23990  hypothetical protein [KO:K00176] [EC:1.2.7.3]
DSCA_24140  hypothetical protein [KO:K00176] [EC:1.2.7.3]
DSCA_62760  hypothetical protein [KO:K00176] [EC:1.2.7.3]
DSCA_35640  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
DSCA_35630  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
DSCA_58790  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DSCA_63520  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DSCA_58800  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DSCA_63510  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
DSCA_63530  frdC; fumarate reductase [KO:K00241]
DSCA_52520  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
DSCA_09330  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DSCA_35620  pyruvate carboxylase [KO:K01960] [EC:6.4.1.1]
DSCA_46330  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
DSCA_42810  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
DSCA_42800  hypothetical protein [KO:K00627] [EC:2.3.1.12]
DSCA_29980  pyruvate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
DSCA_30000  pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
DSCA_52570  poR; pyruvate synthase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dalk00010  Glycolysis / Gluconeogenesis
dalk00053  Ascorbate and aldarate metabolism
dalk00061  Fatty acid biosynthesis
dalk00071  Fatty acid degradation
dalk00190  Oxidative phosphorylation
dalk00220  Arginine biosynthesis
dalk00250  Alanine, aspartate and glutamate metabolism
dalk00280  Valine, leucine and isoleucine degradation
dalk00350  Tyrosine metabolism
dalk00470  D-Amino acid metabolism
dalk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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