KEGG   PATHWAY: dhk00020
Entry
dhk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Delftia sp. HK171
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dhk00020  Citrate cycle (TCA cycle)
dhk00020

Module
dhk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dhk00020]
dhk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dhk00020]
dhk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dhk00020]
dhk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dhk00020]
dhk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dhk00020]
Other DBs
GO: 0006099
Organism
Delftia sp. HK171 [GN:dhk]
Gene
BO996_04050  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
BO996_11310  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BO996_22485  excisionase [KO:K01647] [EC:2.3.3.1]
BO996_27515  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
BO996_20635  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BO996_11365  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BO996_16540  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
BO996_16620  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BO996_15785  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BO996_15790  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BO996_15795  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BO996_18175  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BO996_18385  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BO996_04405  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BO996_04410  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BO996_02580  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
BO996_11325  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BO996_11320  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BO996_11335  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BO996_11330  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BO996_12605  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BO996_12610  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BO996_07220  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BO996_11345  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BO996_02420  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
BO996_18185  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BO996_11685  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BO996_18180  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dhk00010  Glycolysis / Gluconeogenesis
dhk00053  Ascorbate and aldarate metabolism
dhk00061  Fatty acid biosynthesis
dhk00071  Fatty acid degradation
dhk00190  Oxidative phosphorylation
dhk00220  Arginine biosynthesis
dhk00250  Alanine, aspartate and glutamate metabolism
dhk00280  Valine, leucine and isoleucine degradation
dhk00350  Tyrosine metabolism
dhk00470  D-Amino acid metabolism
dhk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system