KEGG   PATHWAY: dnx00900
Entry
dnx00900                    Pathway                                
Name
Terpenoid backbone biosynthesis - Diuraphis noxia (Russian wheat aphid)
Description
Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
Class
Metabolism; Metabolism of terpenoids and polyketides
Pathway map
dnx00900  Terpenoid backbone biosynthesis
dnx00900

Module
dnx_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:dnx00900]
dnx_M00367  C10-C20 isoprenoid biosynthesis, non-plant eukaryotes [PATH:dnx00900]
Other DBs
GO: 0009240 0016091
Organism
Diuraphis noxia (Russian wheat aphid) [GN:dnx]
Gene
107173595  acetyl-CoA acetyltransferase, cytosolic [KO:K00626] [EC:2.3.1.9]
107164291  acetyl-CoA acetyltransferase B, mitochondrial [KO:K00626] [EC:2.3.1.9]
107172751  hydroxymethylglutaryl-CoA synthase 1-like [KO:K01641] [EC:2.3.3.10]
107170412  hydroxymethylglutaryl-CoA synthase 1-like isoform X1 [KO:K01641] [EC:2.3.3.10]
107174068  hydroxymethylglutaryl-CoA synthase 2-like [KO:K01641] [EC:2.3.3.10]
107170987  3-hydroxy-3-methylglutaryl-coenzyme A reductase [KO:K00021] [EC:1.1.1.34]
107161903  mevalonate kinase [KO:K00869] [EC:2.7.1.36]
107173298  phosphomevalonate kinase [KO:K13273] [EC:2.7.4.2]
107166514  diphosphomevalonate decarboxylase [KO:K01597] [EC:4.1.1.33]
107165201  isopentenyl-diphosphate Delta-isomerase 1-like isoform X1 [KO:K01823] [EC:5.3.3.2]
107169864  isopentenyl-diphosphate Delta-isomerase 1-like isoform X1 [KO:K01823] [EC:5.3.3.2]
107163395  farnesyl pyrophosphate synthase [KO:K00787] [EC:2.5.1.1 2.5.1.10]
107161321  geranylgeranyl pyrophosphate synthase-like [KO:K00804] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
107172575  geranylgeranyl pyrophosphate synthase [KO:K00804] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
107171103  decaprenyl-diphosphate synthase subunit 1 [KO:K12504] [EC:2.5.1.91]
107170723  decaprenyl-diphosphate synthase subunit 2-like [KO:K12505] [EC:2.5.1.91]
107170726  decaprenyl-diphosphate synthase subunit 2-like [KO:K12505] [EC:2.5.1.91]
107163442  dehydrodolichyl diphosphate syntase complex subunit DHDDS [KO:K11778] [EC:2.5.1.87]
107165308  dehydrodolichyl diphosphate syntase complex subunit nus1 [KO:K19177] [EC:2.5.1.87]
107173587  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [KO:K05955] [EC:2.5.1.58 2.5.1.59]
107172137  protein farnesyltransferase subunit beta [KO:K05954] [EC:2.5.1.58]
107162139  CAAX prenyl protease 2 [KO:K08658] [EC:3.4.26.1]
107168625  CAAX prenyl protease 1 homolog [KO:K06013] [EC:3.4.24.84]
107163542  protein-S-isoprenylcysteine O-methyltransferase [KO:K00587] [EC:2.1.1.100]
107163506  prenylcysteine oxidase 1-like [KO:K05906] [EC:1.8.3.5 1.8.3.6]
107162475  farnesol dehydrogenase-like [KO:K15890] [EC:1.1.1.216]
107163401  farnesol dehydrogenase-like [KO:K15890] [EC:1.1.1.216]
107164395  farnesol dehydrogenase-like [KO:K15890] [EC:1.1.1.216]
107167415  dehydrogenase/reductase SDR family member 11-like [KO:K15890] [EC:1.1.1.216]
107167735  farnesol dehydrogenase-like [KO:K15890] [EC:1.1.1.216]
107162000  farnesol dehydrogenase-like [KO:K15890] [EC:1.1.1.216]
107161331  farnesol dehydrogenase-like [KO:K15890] [EC:1.1.1.216]
107165835  dehydrogenase/reductase SDR family member 11-like [KO:K15890] [EC:1.1.1.216]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00118  D-Glyceraldehyde 3-phosphate
C00129  Isopentenyl diphosphate
C00235  Dimethylallyl diphosphate
C00332  Acetoacetyl-CoA
C00341  Geranyl diphosphate
C00353  Geranylgeranyl diphosphate
C00356  (S)-3-Hydroxy-3-methylglutaryl-CoA
C00418  (R)-Mevalonate
C00448  trans,trans-Farnesyl diphosphate
C01107  (R)-5-Phosphomevalonate
C01126  (2E,6E)-Farnesol
C01143  (R)-5-Diphosphomevalonate
C01230  all-trans-Hexaprenyl diphosphate
C02321  cis-1,4-Polyisoprene
C03461  2-trans,6-trans-Farnesal
C04145  all-trans-Nonaprenyl diphosphate
C04146  all-trans-Octaprenyl diphosphate
C04216  all-trans-Heptaprenyl diphosphate
C04506  Protein C-terminal S-farnesyl-L-cysteine
C04574  di-trans,poly-cis-Undecaprenyl diphosphate
C04748  Protein C-terminal S-farnesyl-L-cysteine methyl ester
C05427  Phytyl diphosphate
C05859  ditrans,polycis-Polyprenyl diphosphate
C06081  Polyprenol
C11434  2-C-Methyl-D-erythritol 4-phosphate
C11435  4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11436  2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11437  1-Deoxy-D-xylulose 5-phosphate
C11453  2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
C11811  1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
C16521  Isoprene
C16826  2-cis,6-trans-Farnesyl diphosphate
C17432  all-trans-Decaprenyl diphosphate
C18321  trans,octacis-Decaprenyl diphosphate
C19691  Farnesylcysteine
C19760  2-cis,6-cis-Farnesyl diphosphate
C19852  tritrans,heptacis-Undecaprenyl diphosphate
C19853  trans,polycis-Polyprenyl diphosphate
C20120  S-Farnesyl protein
C20121  trans,trans-Farnesyl phosphate
C20345  Isopentenyl phosphate
C20847  (R)-Mevalonate 3-phosphate
C20848  (R)-Mevalonate 3,5-bisphosphate
C22453  trans-Anhydromevalonate 5-phosphate
Reference
  Authors
Lange BM, Ghassemian M.
  Title
Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
  Journal
Plant Mol Biol 51:925-48 (2003)
DOI:10.1023/A:1023005504702
Reference
  Authors
Saiki R, Nagata A, Kainou T, Matsuda H, Kawamukai M
  Title
Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans.
  Journal
FEBS J 272:5606-22 (2005)
DOI:10.1111/j.1742-4658.2005.04956.x
Reference
PMID:9858571
  Authors
Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A
  Title
The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis.
  Journal
Mol Cell Biol 19:471-83 (1999)
DOI:10.1128/MCB.19.1.471
Reference
  Authors
Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM
  Title
Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an  archaeal alternate mevalonate pathway.
  Journal
J Bacteriol 196:1055-63 (2014)
DOI:10.1128/JB.01230-13
Related
pathway
dnx00010  Glycolysis / Gluconeogenesis
dnx00100  Steroid biosynthesis
dnx00130  Ubiquinone and other terpenoid-quinone biosynthesis
dnx00270  Cysteine and methionine metabolism
dnx00510  N-Glycan biosynthesis
KO pathway
ko00900   
LinkDB

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