KEGG   PATHWAY: dnx04120
Entry
dnx04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Diuraphis noxia (Russian wheat aphid)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
dnx04120  Ubiquitin mediated proteolysis
dnx04120

Other DBs
GO: 0016567
Organism
Diuraphis noxia (Russian wheat aphid) [GN:dnx]
Gene
107166069  ubiquitin-60S ribosomal protein L40 [KO:K02927]
107167928  ubiquitin-like [KO:K02977]
107166021  ubiquitin-like [KO:K02977]
107173723  ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
107173081  SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
107163938  SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
107169124  nedd8-activating enzyme E1 catalytic subunit [KO:K10686] [EC:6.2.1.64]
107172405  ubiquitin-conjugating enzyme E2-17 kDa [KO:K10573] [EC:2.3.2.23]
107168234  probable ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
107165406  ubiquitin-conjugating enzyme E2-17 kDa [KO:K06689] [EC:2.3.2.23]
107164844  ubiquitin-conjugating enzyme E2-24 kDa [KO:K20217] [EC:2.3.2.23]
107166030  ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
107167307  ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
107169256  ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
107172506  SUMO-conjugating enzyme UBC9-B [KO:K10577]
107171666  ubiquitin-conjugating enzyme E2 J1-like [KO:K10578] [EC:2.3.2.23]
107173813  ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
107172385  ubiquitin-conjugating enzyme E2-22 kDa [KO:K04649] [EC:2.3.2.23]
107169233  ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
107166515  NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
107162003  ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
107166601  (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O-like [KO:K10581] [EC:2.3.2.24]
107169290  ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
107168590  ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
107162957  ubiquitin-conjugating enzyme E2 S isoform X1 [KO:K10583] [EC:2.3.2.23]
107164100  probable ubiquitin-conjugating enzyme E2 W-A [KO:K10688] [EC:2.3.2.23 2.3.2.25]
107164355  ubiquitin-conjugating enzyme E2 W-like [KO:K10688] [EC:2.3.2.23 2.3.2.25]
107168867  ubiquitin-protein ligase E3B-like [KO:K10588] [EC:2.3.2.26]
107164463  ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
107166677  E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
107169827  E3 ubiquitin-protein ligase Su(dx) [KO:K05633] [EC:2.3.2.26]
107164026  E3 ubiquitin-protein ligase TRIP12 [KO:K10590] [EC:2.3.2.26]
107167213  E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
107162758  E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
107162428  probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
107169602  E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
107163467  LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC4 [KO:K10615] [EC:2.3.2.26]
107174075  ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
107161415  ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
107167348  STIP1 homology and U box-containing protein 1 [KO:K09561] [EC:2.3.2.27]
107173332  peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
107172488  pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
107168763  RING finger protein 37 isoform X1 [KO:K10600]
107161622  E3 ubiquitin-protein ligase Mdm2-like isoform X1 [KO:K06643] [EC:2.3.2.27]
107164289  E3 ubiquitin-protein ligase CBL-B [KO:K04707] [EC:2.3.2.27]
107171531  E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
107164187  E3 ubiquitin-protein ligase Siah1 [KO:K04506] [EC:2.3.2.27]
107169294  uncharacterized protein LOC107169294 [KO:K04506] [EC:2.3.2.27]
107161639  probable E3 ubiquitin-protein ligase sinah [KO:K04506] [EC:2.3.2.27]
107165263  TNF receptor-associated factor 6-like [KO:K03175] [EC:2.3.2.27]
107162222  E3 ubiquitin-protein ligase RFWD2-like isoform X1 [KO:K10143] [EC:2.3.2.27]
107173012  death-associated inhibitor of apoptosis 1-like [KO:K16061]
107166234  death-associated inhibitor of apoptosis 1-like isoform X1 [KO:K16061]
107170905  E3 SUMO-protein ligase PIAS1-like [KO:K04706] [EC:2.3.2.-]
107167501  E3 SUMO-protein ligase pli1-like [KO:K04706] [EC:2.3.2.-]
107167256  E3 SUMO-protein ligase PIAS1-like [KO:K04706] [EC:2.3.2.-]
107163888  E3 ubiquitin-protein ligase synoviolin A-like [KO:K10601] [EC:2.3.2.27]
107162432  E3 ubiquitin-protein ligase TRIM37-like isoform X1 [KO:K10608] [EC:2.3.2.27]
107162314  RING-box protein 1A [KO:K03868] [EC:2.3.2.32]
107161275  S-phase kinase-associated protein 1 [KO:K03094]
107163009  beta-TrCP isoform X1 [KO:K03362]
107162587  LOW QUALITY PROTEIN: S-phase kinase-associated protein 2 [KO:K03875]
107174204  F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
107167610  cullin-2 [KO:K03870]
107161869  cullin-2-like [KO:K03870]
107167531  cullin-2-like [KO:K03870]
107162387  transcription elongation factor B polypeptide 1 [KO:K03872]
107162391  transcription elongation factor B polypeptide 1-like isoform X1 [KO:K03872]
107168759  transcription elongation factor B polypeptide 2 [KO:K03873]
107165969  protein Vhl [KO:K03871]
107169771  cullin-3-like [KO:K03869]
107163757  cullin-3-B-like [KO:K03869]
107169457  cullin-3-like [KO:K03869]
107166551  cullin-4B [KO:K10609]
107168436  DNA damage-binding protein 1-like [KO:K10610]
107173063  DNA damage-binding protein 1 [KO:K10610]
107161657  DNA excision repair protein ERCC-8-like [KO:K10570]
107170269  DET1 homolog [KO:K10571]
107165284  cullin-5 [KO:K10612]
107162948  anaphase-promoting complex subunit 2 [KO:K03349]
107173764  cell division cycle protein 20 homolog [KO:K03363]
107166262  cell division cycle protein 20 homolog [KO:K03363]
107165856  fizzy-related protein homolog [KO:K03364]
107161764  uncharacterized protein LOC107161764 [KO:K03364]
107163493  anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
107169259  cell division cycle protein 27 homolog isoform X1 [KO:K03350]
107161757  anaphase-promoting complex subunit 4 [KO:K03351]
107166626  anaphase-promoting complex subunit 5 [KO:K03352]
107168312  cell division cycle protein 16 homolog [KO:K03353]
107169522  anaphase-promoting complex subunit 7 [KO:K03354]
107173084  cell division cycle protein 23 homolog [KO:K03355]
107172131  cell division cycle protein 23 homolog [KO:K03355]
107166987  anaphase-promoting complex subunit 10 [KO:K03357]
107173357  anaphase-promoting complex subunit 13 [KO:K12456]
107171387  anaphase-promoting complex subunit 15 [KO:K25228]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
dnx03050  Proteasome
KO pathway
ko04120   
LinkDB

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