KEGG   PATHWAY: dov00020
Entry
dov00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Desulfosarcina ovata subsp. sediminis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dov00020  Citrate cycle (TCA cycle)
dov00020

Module
dov_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dov00020]
dov_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dov00020]
dov_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dov00020]
dov_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dov00020]
Other DBs
GO: 0006099
Organism
Desulfosarcina ovata subsp. sediminis [GN:dov]
Gene
DSCO28_58130  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
DSCO28_35940  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DSCO28_09410  acoA_2; aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
DSCO28_54190  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DSCO28_50140  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
DSCO28_50150  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
DSCO28_16760  lpdA_1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSCO28_50160  lpdA-1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSCO28_52050  lpdA_2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSCO28_63940  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DSCO28_05370  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSCO28_17800  korA; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSCO28_44620  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSCO28_01160  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DSCO28_05380  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSCO28_17790  korB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSCO28_01170  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSCO28_44630  hypothetical protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DSCO28_05390  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
DSCO28_17780  korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
DSCO28_01180  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
DSCO28_05360  2-keto acid:ferredoxin oxidoreductase subunit delta [KO:K00176] [EC:1.2.7.3]
DSCO28_17810  4Fe-4S ferredoxin [KO:K00176] [EC:1.2.7.3]
DSCO28_01150  tungsten formylmethanofuran dehydrogenase subunit G [KO:K00176] [EC:1.2.7.3]
DSCO28_41600  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
DSCO28_41590  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
DSCO28_63970  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
DSCO28_22280  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DSCO28_22290  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
DSCO28_22270  succinate dehydrogenase [KO:K00241]
DSCO28_33690  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
DSCO28_00250  hypothetical protein [KO:K00024] [EC:1.1.1.37]
DSCO28_06510  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DSCO28_41580  hypothetical protein [KO:K01960] [EC:6.4.1.1]
DSCO28_40230  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
DSCO28_65380  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
DSCO28_52030  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
DSCO28_52040  hypothetical protein [KO:K00627] [EC:2.3.1.12]
DSCO28_16750  acoC; dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system [KO:K00627] [EC:2.3.1.12]
DSCO28_25980  poR_1; pyruvate synthase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
DSCO28_33650  poR_2; pyruvate synthase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dov00010  Glycolysis / Gluconeogenesis
dov00053  Ascorbate and aldarate metabolism
dov00061  Fatty acid biosynthesis
dov00071  Fatty acid degradation
dov00190  Oxidative phosphorylation
dov00220  Arginine biosynthesis
dov00250  Alanine, aspartate and glutamate metabolism
dov00280  Valine, leucine and isoleucine degradation
dov00350  Tyrosine metabolism
dov00470  D-Amino acid metabolism
dov00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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