KEGG   PATHWAY: ecb00020
Entry
ecb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Equus caballus (horse)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ecb00020  Citrate cycle (TCA cycle)
ecb00020

Module
ecb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ecb00020]
ecb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ecb00020]
ecb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ecb00020]
ecb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ecb00020]
ecb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ecb00020]
Other DBs
GO: 0006099
Organism
Equus caballus (horse) [GN:ecb]
Gene
100052279  CS; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
100053195  ACLY; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
100055803  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
100067866  ACO1; cytoplasmic aconitate hydratase isoform X1 [KO:K01681] [EC:4.2.1.3]
100066416  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
100069086  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
100052969  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X2 [KO:K00030] [EC:1.1.1.41]
100057896  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
100060114  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
102148971  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
100051533  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X2 [KO:K00164] [EC:1.2.4.2]
100065225  OGDH; 2-oxoglutarate dehydrogenase, mitochondrial isoform X3 [KO:K00164] [EC:1.2.4.2]
100057047  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
100050920  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
100067584  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
100063955  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100050430  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100034244  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
100050091  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
100065940  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X3 [KO:K00236]
100629334  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
100060381  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
100051612  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
100061046  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
100052853  PC; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
100055710  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
100054903  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X2 [KO:K01596] [EC:4.1.1.32]
100051597  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
100053606  PDHA2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial [KO:K00161] [EC:1.2.4.1]
100050581  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
100062027  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ecb00010  Glycolysis / Gluconeogenesis
ecb00053  Ascorbate and aldarate metabolism
ecb00061  Fatty acid biosynthesis
ecb00062  Fatty acid elongation
ecb00071  Fatty acid degradation
ecb00190  Oxidative phosphorylation
ecb00220  Arginine biosynthesis
ecb00250  Alanine, aspartate and glutamate metabolism
ecb00280  Valine, leucine and isoleucine degradation
ecb00350  Tyrosine metabolism
ecb00470  D-Amino acid metabolism
ecb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system