KEGG   PATHWAY: ecg00020
Entry
ecg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli O127:H6 E2348/69 (EPEC)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ecg00020  Citrate cycle (TCA cycle)
ecg00020

Module
ecg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ecg00020]
ecg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ecg00020]
ecg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ecg00020]
ecg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ecg00020]
ecg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ecg00020]
Other DBs
GO: 0006099
Organism
Escherichia coli O127:H6 E2348/69 (EPEC) [GN:ecg]
Gene
E2348C_0600  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
E2348C_0292  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
E2348C_1468  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
E2348C_0121  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
E2348C_1277  icd; isocitrate dehydrogenase, specificfor NADP+ [KO:K00031] [EC:1.1.1.42]
E2348C_4370  predicted 2-oxoglutarate decarboxylase, thiamin-requiring [KO:K00164] [EC:1.2.4.2]
E2348C_0605  sucA; 2-oxoglutarate decarboxylase, thiamin-requiring [KO:K00164] [EC:1.2.4.2]
E2348C_4371  predicted dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
E2348C_0606  sucB; dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
E2348C_4372  predicted dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
E2348C_0119  lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes [KO:K00382] [EC:1.8.1.4]
E2348C_4374  predicted succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [KO:K01902] [EC:6.2.1.5]
E2348C_0608  sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [KO:K01902] [EC:6.2.1.5]
E2348C_4373  predicted succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
E2348C_0607  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
E2348C_0603  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
E2348C_0604  sdhB; succinate dehydrogenase, FeS subunit [KO:K00240] [EC:1.3.5.1]
E2348C_0601  sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00241]
E2348C_0602  sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00242]
E2348C_4482  frdA; fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit FrdA [KO:K00244] [EC:1.3.5.1]
E2348C_4481  frdB; fumarate reductase (anaerobic), Fe-S subunit [KO:K00245] [EC:1.3.5.1]
E2348C_4480  frdC; fumarate reductase (anaerobic), membrane anchor subunit [KO:K00246]
E2348C_4479  frdD; fumarate reductase (anaerobic), membrane anchor subunit [KO:K00247]
E2348C_4449  fumB; anaerobic class I fumarate hydratase (fumaraseB) [KO:K01676] [EC:4.2.1.2]
E2348C_1697  fumA; fumarate hydratase (fumarase A), aerobic ClassI [KO:K01676] [EC:4.2.1.2]
E2348C_1696  fumC; fumarate hydratase (fumarase C), aerobic Class II [KO:K01679] [EC:4.2.1.2]
E2348C_1760  ydhZ; predicted protein [KO:K01675] [EC:4.2.1.2]
E2348C_3181  yggD; predicted DNA-binding transcriptional regulator [KO:K01774] [EC:4.2.1.2]
E2348C_3507  mdh; malate dehydrogenase, NAD(P)-binding [KO:K00024] [EC:1.1.1.37]
E2348C_2355  mqo; malate dehydrogenase, FAD/NAD(P)-binding domain [KO:K00116] [EC:1.1.5.4]
E2348C_3647  pck; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
E2348C_0117  aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding [KO:K00163] [EC:1.2.4.1]
E2348C_0118  aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 [KO:K00627] [EC:2.3.1.12]
E2348C_1539  ydbK; fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ecg00010  Glycolysis / Gluconeogenesis
ecg00053  Ascorbate and aldarate metabolism
ecg00061  Fatty acid biosynthesis
ecg00071  Fatty acid degradation
ecg00190  Oxidative phosphorylation
ecg00220  Arginine biosynthesis
ecg00250  Alanine, aspartate and glutamate metabolism
ecg00280  Valine, leucine and isoleucine degradation
ecg00350  Tyrosine metabolism
ecg00470  D-Amino acid metabolism
ecg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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