KEGG   PATHWAY: eko00020
Entry
eko00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli KO11FL
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eko00020  Citrate cycle (TCA cycle)
eko00020

Module
eko_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eko00020]
eko_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eko00020]
eko_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eko00020]
eko_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eko00020]
eko_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eko00020]
Other DBs
GO: 0006099
Organism
Escherichia coli KO11FL [GN:eko]
Gene
EKO11_3159  citrate synthase I [KO:K01647] [EC:2.3.3.1]
EKO11_3509  2-methylcitrate synthase/citrate synthase II [KO:K01659] [EC:2.3.3.5]
EKO11_2575  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
EKO11_3798  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EKO11_2698  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
EKO11_3154  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
EKO11_3153  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
EKO11_3800  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
EKO11_3151  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
EKO11_3152  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
EKO11_3156  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EKO11_3155  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
EKO11_3158  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
EKO11_3157  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
EKO11_4159  fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
EKO11_4160  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
EKO11_4161  fumarate reductase subunit C [KO:K00246]
EKO11_4162  fumarate reductase D subunit [KO:K00247]
EKO11_2165  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
EKO11_4197  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
EKO11_2166  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
EKO11_2100  hypothetical protein [KO:K01675] [EC:4.2.1.2]
EKO11_0797  mannitol repressor, MtlR [KO:K01774] [EC:4.2.1.2]
EKO11_0488  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
EKO11_1545  malate/quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
EKO11_0342  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
EKO11_3802  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
EKO11_3801  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
EKO11_2436  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eko00010  Glycolysis / Gluconeogenesis
eko00053  Ascorbate and aldarate metabolism
eko00061  Fatty acid biosynthesis
eko00071  Fatty acid degradation
eko00190  Oxidative phosphorylation
eko00220  Arginine biosynthesis
eko00250  Alanine, aspartate and glutamate metabolism
eko00280  Valine, leucine and isoleucine degradation
eko00350  Tyrosine metabolism
eko00470  D-Amino acid metabolism
eko00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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