KEGG   PATHWAY: eoj00020
Entry
eoj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli O26:H11 11368 (EHEC)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eoj00020  Citrate cycle (TCA cycle)
eoj00020

Module
eoj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eoj00020]
eoj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eoj00020]
eoj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eoj00020]
eoj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eoj00020]
eoj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eoj00020]
Other DBs
GO: 0006099
Organism
Escherichia coli O26:H11 11368 (EHEC) [GN:eoj]
Gene
ECO26_0781  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
ECO26_0370  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
ECO26_1842  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
ECO26_0120  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ECO26_1670  icd; isocitrate dehydrogenase, specific for NADP+ [KO:K00031] [EC:1.1.1.42]
ECO26_0786  sucA; 2-oxoglutarate decarboxylase, thiamin-requiring [KO:K00164] [EC:1.2.4.2]
ECO26_0787  sucB; dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
ECO26_0118  lpd; lipoamide dehydrogenase, E3 component [KO:K00382] [EC:1.8.1.4]
ECO26_0789  sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [KO:K01902] [EC:6.2.1.5]
ECO26_0788  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
ECO26_0784  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ECO26_0785  sdhB; succinate dehydrogenase, FeS subunit [KO:K00240] [EC:1.3.5.1]
ECO26_0782  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
ECO26_0783  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
ECO26_5323  frdA; fumarate reductase catalytic and NAD/flavoprotein subunit FrdA, anaerobic [KO:K00244] [EC:1.3.5.1]
ECO26_5322  frdB; fumarate reductase, Fe-S subunit FrdB [KO:K00245] [EC:1.3.5.1]
ECO26_5321  frdC; fumarate reductase, membrane anchor subunit FrdC, anaerobic [KO:K00246]
ECO26_5320  frdD; fumarate reductase, membrane anchor subunit FrdD, anaerobic [KO:K00247]
ECO26_2340  fumA; fumarate hydratase, aerobic, class I [KO:K01676] [EC:4.2.1.2]
ECO26_5234  fumB; anaerobic class I fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ECO26_2339  fumC; fumarate hydratase, aerobic, class II [KO:K01679] [EC:4.2.1.2]
ECO26_2403  ydhZ; conserved predicted protein [KO:K01675] [EC:4.2.1.2]
ECO26_4021  yggD; predicted DNA-binding transcriptional regulator [KO:K01774] [EC:4.2.1.2]
ECO26_4335  mdh; malate dehydrogenase, NAD(P)-binding [KO:K00024] [EC:1.1.1.37]
ECO26_3137  mqo; malate dehydrogenase Mqo, FAD/NAD(P)-binding domain [KO:K00116] [EC:1.1.5.4]
ECO26_4491  pck; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ECO26_0116  aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding [KO:K00163] [EC:1.2.4.1]
ECO26_0117  aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 [KO:K00627] [EC:2.3.1.12]
ECO26_1981  ydbK; fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eoj00010  Glycolysis / Gluconeogenesis
eoj00053  Ascorbate and aldarate metabolism
eoj00061  Fatty acid biosynthesis
eoj00071  Fatty acid degradation
eoj00190  Oxidative phosphorylation
eoj00220  Arginine biosynthesis
eoj00250  Alanine, aspartate and glutamate metabolism
eoj00280  Valine, leucine and isoleucine degradation
eoj00350  Tyrosine metabolism
eoj00470  D-Amino acid metabolism
eoj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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