KEGG   PATHWAY: etw00020
Entry
etw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli O157:H7 TW14359 (EHEC)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
etw00020  Citrate cycle (TCA cycle)
etw00020

Module
etw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:etw00020]
etw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:etw00020]
etw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:etw00020]
etw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:etw00020]
etw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:etw00020]
Other DBs
GO: 0006099
Organism
Escherichia coli O157:H7 TW14359 (EHEC) [GN:etw]
Gene
ECSP_0762  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
ECSP_0394  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
ECSP_1796  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
ECSP_0119  acnB; bifunctional aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ECSP_1516  icd; isocitrate dehydrogenase, specific for NADP+ [KO:K00031] [EC:1.1.1.42]
ECSP_0768  sucA; 2-oxoglutarate decarboxylase, thiamin-requiring [KO:K00164] [EC:1.2.4.2]
ECSP_0769  sucB; dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
ECSP_0117  lpd; lipoamide dehydrogenase, E3 component is part of three enzyme complexes [KO:K00382] [EC:1.8.1.4]
ECSP_0771  sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [KO:K01902] [EC:6.2.1.5]
ECSP_0770  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
ECSP_0765  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ECSP_0766  sdhB; succinate dehydrogenase, FeS subunit [KO:K00240] [EC:1.3.5.1]
ECSP_0763  sdhC; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00241]
ECSP_0764  sdhD; succinate dehydrogenase, membrane subunit, binds cytochrome b556 [KO:K00242]
ECSP_5256  frdA; fumarate reductase (anaerobic) catalytic and NAD [KO:K00244] [EC:1.3.5.1]
ECSP_5255  frdB; fumarate reductase (anaerobic), Fe-S subunit [KO:K00245] [EC:1.3.5.1]
ECSP_5254  frdC; fumarate reductase (anaerobic), membrane anchor subunit [KO:K00246]
ECSP_5253  frdD; fumarate reductase (anaerobic), membrane anchor subunit [KO:K00247]
ECSP_2176  fumA; fumarate hydratase (fumarase A), aerobic Class I [KO:K01676] [EC:4.2.1.2]
ECSP_0775  putative fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ECSP_5221  fumB; anaerobic class I fumarate hydratase (fumarase B) [KO:K01676] [EC:4.2.1.2]
ECSP_2175  fumC; fumarate hydratase (fumarase C),aerobic Class II [KO:K01679] [EC:4.2.1.2]
ECSP_2242  ydhZ; predicted protein [KO:K01675] [EC:4.2.1.2]
ECSP_3900  yggD; predicted DNA-binding transcriptional regulator [KO:K01774] [EC:4.2.1.2]
ECSP_4205  mdh; malate dehydrogenase, NAD(P)-binding [KO:K00024] [EC:1.1.1.37]
ECSP_3089  mqo; malate dehydrogenase, FAD/NAD(P)-binding domain protein [KO:K00116] [EC:1.1.5.4]
ECSP_4353  pck; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ECSP_0115  aceE; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding [KO:K00163] [EC:1.2.4.1]
ECSP_0116  aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 [KO:K00627] [EC:2.3.1.12]
ECSP_1875  ydbK; fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein, conserved protein, FeS binding protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
etw00010  Glycolysis / Gluconeogenesis
etw00053  Ascorbate and aldarate metabolism
etw00061  Fatty acid biosynthesis
etw00071  Fatty acid degradation
etw00190  Oxidative phosphorylation
etw00220  Arginine biosynthesis
etw00250  Alanine, aspartate and glutamate metabolism
etw00280  Valine, leucine and isoleucine degradation
etw00350  Tyrosine metabolism
etw00470  D-Amino acid metabolism
etw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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