KEGG   PATHWAY: gca00020
Entry
gca00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gallionella capsiferriformans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gca00020  Citrate cycle (TCA cycle)
gca00020

Module
gca_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gca00020]
gca_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gca00020]
gca_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gca00020]
gca_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gca00020]
Other DBs
GO: 0006099
Organism
Gallionella capsiferriformans [GN:gca]
Gene
Galf_1336  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Galf_0094  2-methylcitrate synthase/citrate synthase II [KO:K01659] [EC:2.3.3.5]
Galf_1209  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Galf_2246  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Galf_1337  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Galf_1338  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Galf_0424  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Galf_2559  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Galf_2560  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Galf_1333  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Galf_1334  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Galf_1331  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Galf_1332  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Galf_1175  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01676] [EC:4.2.1.2]
Galf_2059  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Galf_1330  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Galf_0098  malate/quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Galf_2670  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Galf_2671  catalytic domain-containing protein of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Galf_0061  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Galf_0060  thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00170] [EC:1.2.7.1]
Galf_0062  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gca00010  Glycolysis / Gluconeogenesis
gca00061  Fatty acid biosynthesis
gca00071  Fatty acid degradation
gca00190  Oxidative phosphorylation
gca00220  Arginine biosynthesis
gca00250  Alanine, aspartate and glutamate metabolism
gca00280  Valine, leucine and isoleucine degradation
gca00350  Tyrosine metabolism
gca00470  D-Amino acid metabolism
gca00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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