KEGG   PATHWAY: gps00020
Entry
gps00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Paraglaciecola psychrophila
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gps00020  Citrate cycle (TCA cycle)
gps00020

Module
gps_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gps00020]
gps_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gps00020]
gps_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gps00020]
gps_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gps00020]
gps_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gps00020]
Other DBs
GO: 0006099
Organism
Paraglaciecola psychrophila [GN:gps]
Gene
C427_2222  citrate synthase I [KO:K01647] [EC:2.3.3.1]
C427_2937  2-methylcitrate synthase/citrate synthase II [KO:K01659] [EC:2.3.3.5]
C427_2300  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
C427_1272  Aconitase B, N-terminal [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C427_1273  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C427_2009  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C427_2227  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
C427_2228  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
C427_1450  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
C427_2230  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
C427_2229  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
C427_2225  sdhA; succinate dehydrogenase catalytic subunit [KO:K00239] [EC:1.3.5.1]
C427_2226  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
C427_2223  succinate dehydrogenase, cytochrome b subunit [KO:K00241]
C427_2224  putative succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhC [KO:K00242]
C427_3278  fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
C427_2875  fumarate lyase [KO:K01679] [EC:4.2.1.2]
C427_4592  fumarase [KO:K01679] [EC:4.2.1.2]
C427_5153  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C427_1242  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
C427_1452  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
C427_1451  pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gps00010  Glycolysis / Gluconeogenesis
gps00053  Ascorbate and aldarate metabolism
gps00061  Fatty acid biosynthesis
gps00071  Fatty acid degradation
gps00190  Oxidative phosphorylation
gps00220  Arginine biosynthesis
gps00250  Alanine, aspartate and glutamate metabolism
gps00280  Valine, leucine and isoleucine degradation
gps00350  Tyrosine metabolism
gps00470  D-Amino acid metabolism
gps00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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