KEGG   PATHWAY: halk00020
Entry
halk00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Vreelandella alkaliphila
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
halk00020  Citrate cycle (TCA cycle)
halk00020

Module
halk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:halk00020]
halk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:halk00020]
halk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:halk00020]
halk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:halk00020]
Other DBs
GO: 0006099
Organism
Vreelandella alkaliphila [GN:halk]
Gene
CUU95_00965  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CUU95_18040  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
CUU95_09025  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CUU95_16095  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CUU95_00735  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CUU95_10420  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
CUU95_00940  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
CUU95_00935  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CUU95_00930  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CUU95_00920  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CUU95_00925  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CUU95_00950  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CUU95_00945  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CUU95_00960  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CUU95_00955  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CUU95_15165  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CUU95_16245  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
CUU95_12395  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CUU95_12355  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CUU95_09850  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CUU95_17385  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CUU95_17390  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
halk00010  Glycolysis / Gluconeogenesis
halk00053  Ascorbate and aldarate metabolism
halk00061  Fatty acid biosynthesis
halk00071  Fatty acid degradation
halk00190  Oxidative phosphorylation
halk00220  Arginine biosynthesis
halk00250  Alanine, aspartate and glutamate metabolism
halk00280  Valine, leucine and isoleucine degradation
halk00350  Tyrosine metabolism
halk00470  D-Amino acid metabolism
halk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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